Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1639 100 3e-16 seq1470 86.0 7e-12 seq1728 84.2 3e-11 >seq1639 Length=5101707 Score = 100 bits (110), Expect = 3e-16 Identities = 182/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| | ||| || ||||| | || ||||||||||| || ||| Sbjct 2279772 CCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGACCTCGTTTC 2279831 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | ||||| || ||||||||||| || || ||||| ||||| Sbjct 2279832 TTAAGCCAGAAGATGGAGCAAAAGCTTCCAGAGAAGAAGATGCCTTCAACACAAGCGAAA 2279891 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | | || ||||| |||| | || | ||| | ||| |||||||||||||| Sbjct 2279892 GCTACAATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 2279948 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 126302 || || ||| ||| || || | || | ||||| ||| || | | ||| | | || Sbjct 2279949 GCTTTCTTCGCGACGCAAGGAATCGTTTCAATCGCGCGAAATAGATGATCTCTCTCTTTG 2280008 Query 126303 ATGGATCTTTGATGTACTTATC 126324 | ||||||||| ||| |||| Sbjct 2280009 TT--ATCTTTGATATACGTATC 2280028 >seq1470 Length=2917085 Score = 86.0 bits (94), Expect = 7e-12 Identities = 190/281 (68%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT---CGC 10932 ||| ||||||||||||||||| || ||||| || || ||||| | |||||||| | Sbjct 2793284 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCACC 2793343 Query 10933 GGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 10992 | ||| ||| || | | ||| |||| ||||| ||||| |||||||| || || || Sbjct 2793344 GCCCATCCCA---GCTCCTCTCTGCCTACCCACGGCATCAATCTCATCGATAAACACAAT 2793400 Query 10993 ACACGGTTGATTTTCA-CGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACAC 11051 ||| || || ||| | || ||||| | ||| | ||||| ||||| |||| Sbjct 2793401 ACAAGG-TGCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCCACAC 2793459 Query 11052 CCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 11111 | ||||| | || ||||| | | || | |||| | ||| || || | ||| | Sbjct 2793460 CAACAAAAAGCTCAACAAACTCAGACGCAGCACATGAAAAGAACGGCACTCCAGCTTCTC 2793519 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 | || | |||| || | || ||||||||||| || ||| Sbjct 2793520 CAGCTACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGT 2793560 >seq1728 Length=1434513 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 8648 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTC 8707 ||||||||||||| ||||||||||||| || || ||| || | ||||| |||||||| Sbjct 580507 GAATTACCGAGAAGCCTATGGTCTCTTCGCCTGTAACGGAATCTTGTTCAATCACGAGTC 580566 Query 8708 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 8746 ||| || || || | | |||||||| | ||||||||| Sbjct 580567 ACCGCGCCGAGGTGAGAACTTCGTGACTAGGAAGATCAC 580605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597339084307520