Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1396 113 5e-20 seq1328 111 2e-19 seq1208 102 9e-17 seq793 98.7 1e-15 seq1125 89.7 6e-13 seq236 84.2 2e-11 >seq1396 Length=1446835 Score = 113 bits (124), Expect = 5e-20 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | ||| ||||| ||||||||||||||||||| || || | || ||| Sbjct 399901 ACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGGCCATCCTCT 399842 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| || || | |||||| || | || | || |||||||| | || Sbjct 399841 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGT-CTTG 399783 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 | || | || | ||| | | | ||||| ||| |||||| |||| ||||| || Sbjct 399782 GATCTTGGCTTTAACGTTGTCGATTGTGTCAGAGCT---TTCCACCTCGAGGGTGATAGT 399726 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || ||||| || ||||| ||||| Sbjct 399725 CTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| |||||||| || || |||| || ||||| || |||||||| Sbjct 401023 TCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCCTCGAGCTGTTTTCCAGCGAAG 400964 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | | ||||||||| ||| || || | ||| Sbjct 400963 ATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGTT 400905 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | ||||| |||| ||||| || | |||||||| || || |||| ||||| Sbjct 400904 GTCAATGGTGTCGGAGCTC---TCCACCTCCAGTGTGATGGTCTTCCCGGTTAAAGTCTT 400848 Query 42194 TACAAAGATTTGCAT 42208 || || || ||||| Sbjct 400847 CACGAAAATCTGCAT 400833 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | || |||||| || || || || ||||||| ||| || | || || Sbjct 400814 CACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAAGTGCGACCATCCTC 400755 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || |||||||| ||||| ||||||||||| | || | | ||||||||| Sbjct 400754 AAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTG 400695 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 ||| || || | ||| | | | ||||| |||| ||||| || | ||||| | Sbjct 400694 GATCTTAGCCTTCA-CGTTGTCAATGGTGTCAGAGCTC---TCCACCTCCAAGGTGATAG 400639 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || | ||||| || ||||| ||||| Sbjct 400638 TTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 400605 >seq1328 Length=1576597 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 41983 CTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCA 42042 ||||||| || | | ||||| || | || ||||||||||||||||| |||||||| Sbjct 273106 CTCCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCA 273047 Query 42043 GAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCA 42102 ||| || | || || ||||| ||||| || || || |||| ||||||||| | || | Sbjct 273046 AAGTACGGCCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGA 272987 Query 42103 CGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACAT 42162 | ||||| || ||| ||| || | | | | |||||| ||| || | Sbjct 272986 TTCCTTCCTTATCTTGGATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCT 272927 Query 42163 CGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | | || ||||| |||||||| || |||||||||||||||||||| Sbjct 272926 CAAGAGTTATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 >seq1208 Length=4595443 Score = 102 bits (112), Expect = 9e-17 Identities = 163/230 (71%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||| | ||||||||| | |||| ||| ||||| || ||||| ||||| Sbjct 3925806 ACCACCTCCGAGACGAAGCACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGC 3925747 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | | || ||||||||||||||| | || || || ||||||||| | || Sbjct 3925746 AAGTGTGTGACCATCCTCTAGCTGCTTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGG 3925687 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||||||| | ||| | || | || | ||| | | | || || ||| || Sbjct 3925686 GATTCCTTCCTTGT-CTTGAATCTTAGCTTTAACGTTGTCAATAGTATCAGAGCT---TT 3925631 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 42206 | || || | |||||||||||||| || | |||||| |||||||| ||| Sbjct 3925630 CAACCTCCAAAGTGATGGTTTTGCCTGTCAACGTCTTCACAAAGATCTGC 3925581 Score = 100 bits (110), Expect = 3e-16 Identities = 167/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 |||||| ||| |||| | ||| | ||||||||| | || ||||||||| || || Sbjct 3926043 AATTTACATACCACCTCCGAGACGAAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTT 3925984 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 ||||||||| || || || | || || ||||||||||| | || ||||||| |||||| Sbjct 3925983 GTAATCAGCGAGTGTGCGTCCATCTTCGAGCTGCTTACCGGAAAAGATGAGTCTCTGCTG 3925924 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC--- 42148 ||| | ||| | | |||||||||| || || |||| | | | ||||| Sbjct 3925923 GTCTGGTGGGATCCCCTCCTTGTCCTCAATCTTCGCCTTGACATTATCGATTGTGTCTGA 3925864 Query 42149 GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || || || | || ||||| || || || | ||||| ||||| |||||||| Sbjct 3925863 GCCC---TCAACCTCCAAAGTAATGGTCTTTCCAGTACGGGTCTTCACAAAAATTTGCAT 3925807 >seq793 Length=772624 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| ||||| ||||| | |||| || ||||||||||| || || Sbjct 611125 TCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAG 611066 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| | |||||||| | || | | ||||||||| ||| ||| ||||| ||| Sbjct 611065 ATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCTTTGA-CGTT 611007 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | || || |||| || || || | || ||||| ||||| || || ||||| Sbjct 611006 GTCAATAGTATCAGAGCTC---TCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTT 610950 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 610949 GACAAAGATCTGCAT 610935 >seq1125 Length=2998257 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || || | || || |||| || |||||||| || ||||| Sbjct 292785 TCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 292844 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | |||||||||||| | ||| | | ||||||||| ||| || |||| | Sbjct 292845 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 292904 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || || || |||| ||||| || || |||||||| || || || Sbjct 292905 TCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACG 292964 Query 42198 AAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 292965 AAGATCTGCATCTT 292978 >seq236 Length=1640546 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || || ||||| || |||| || ||||| || || ||||| Sbjct 1089225 TCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAA 1089166 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | |||||||||||| | ||| | | |||||||| ||| || ||| | | Sbjct 1089165 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTG 1089106 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || || || || | || ||||| || |||||||| || || || Sbjct 1089105 TCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACG 1089046 Query 42198 AAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 1089045 AAGATCTGCATCTT 1089032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543199599928960