Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq793 131 2e-25 seq1328 129 6e-25 seq236 125 7e-24 seq1177 107 2e-18 seq1396 105 7e-18 seq1125 105 7e-18 seq1208 100 3e-16 seq204 100 3e-16 >seq793 Length=772624 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| |||||||| ||||| |||||||| || || | || | |||| Sbjct 611147 AAGGACAAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTC 611088 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||||||| |||||| | ||||||| |||||||| ||||| |||||||| || || Sbjct 611087 TTCAAGCTGCTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTC 611028 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | | |||||||| || || | |||||| | || || || | ||| | || Sbjct 611027 CTGGA-TCTTTGCTTTGACGTTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGG 610969 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||| |||| ||| || || || || ||||| Sbjct 610968 TCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 610935 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||||||||| |||||||||||||| || | ||| || | ||||| ||||| || ||| Sbjct 610903 GTCGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCTTCTAGCTGTTTACCG 610844 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | |||||||| |||||||| |||||||| || || || ||| ||| Sbjct 610843 GCGAAGATTAATCTTTGCTGGTCCGGAGGAATGCCTTCTTTATCCTGGATCTTTGCCTTA 610784 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || ||| | || || || | ||| | ||||||||| || | ||| Sbjct 610783 ACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTT 610724 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||||||||| Sbjct 610723 TTCACGAAAATTTGCAT 610707 >seq1328 Length=1576597 Score = 129 bits (142), Expect = 6e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64225 CAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCG 64284 ||| ||||| || | || | || || || |||||||| |||| ||| || | || || Sbjct 273099 CAACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAAAGTACG 273040 Query 64285 CGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTC 64344 | ||||||||||| || |||||| |||| || | ||||||||| ||||| |||||||| Sbjct 273039 GCCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATTCCTTC 272980 Query 64345 TTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| || ||| ||| ||| || | ||| || | || || || | ||| Sbjct 272979 CTTATCTTGGATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCTCAAGAGT 272920 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||||| || | ||| ||||| || |||||||| Sbjct 272919 TATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 || |||| || || || || || ||||||||||| || | || || | || || || Sbjct 273314 AGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCCGCAAGCGTACGACCATCCTCGAGT 273255 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| |||||| | || || | ||||||||| ||||| ||||||||||| ||||| || Sbjct 273254 TGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTATCTTGGATC 273195 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||| || || | ||||| | || || || | |||| ||||| || Sbjct 273194 TTGGCCTTGACGTTATCGATGGTATCTGAGCTTTCGACCTCAAGTGTTATAGTCTTCCCT 273135 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| || || || || ||||| Sbjct 273134 GTAAGAGTCTTAACAAAGATCTGCAT 273109 >seq236 Length=1640546 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||| ||||| || || |||||||| || |||| ||||| ||||| Sbjct 1089246 AGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCT 1089187 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || ||||| |||| | ||||||||||| || || |||||||| || ||| Sbjct 1089186 TCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCT 1089127 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| || | || || || || || |||| |||| ||| Sbjct 1089126 TGGA-TCTTCGCTTTCACATTGTCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGT 1089068 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| || || | ||||| ||||| || ||||| || Sbjct 1089067 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 1089032 >seq1177 Length=2734319 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || ||||||||||| || | |||||| | ||||| ||||| || ||| Sbjct 987923 GTTGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCTAGCTGTTTACCG 987864 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | |||||||| |||||||| ||||| || || || || ||| ||| Sbjct 987863 GCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTA 987804 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || || || | ||| | |||||| || || | ||| Sbjct 987803 ACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGAGTGATGGTCTTACCAGTTAGTGTT 987744 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||||||||| Sbjct 987743 TTCACGAAAATTTGCAT 987727 >seq1396 Length=1446835 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| | |||| ||||| || || || ||||| || || || Sbjct 400832 ACCACCACGAAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGC 400773 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || |||||||| ||||| || | ||||| ||||||||||| ||||| Sbjct 400772 CAAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 400713 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||| || || | || ||| | ||||| Sbjct 400712 AATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCAC 400653 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || ||||| |||||||| || ||||| || ||||| Sbjct 400652 CTCCAAGGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 400605 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| |||||||| || || |||||||| || || | ||||| |||| || ||||| Sbjct 401035 TGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCCTCGAGCTGT 400976 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | ||||| ||||||||||| ||||| || ||||| || || || || || Sbjct 400975 TTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATCTTA 400916 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | || || | ||||| || | || | |||||| ||||| Sbjct 400915 GCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTCCCGGTT 400856 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 ||||| || |||||||| ||||| Sbjct 400855 AAAGTCTTCACGAAAATCTGCAT 400833 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| || ||||||||||| || | ||| || | || || | |||| Sbjct 400579 TGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCCAAGGTACGACCATCCTCCAACTGC 400520 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || | || ||||||||| ||||| |||||||| || || || || || Sbjct 400519 TTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCCTGAATCTTG 400460 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | || || | ||||| || | || | |||||| || || Sbjct 400459 GCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCAGTG 400400 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | ||| || |||||||| ||||| Sbjct 400399 AGAGTCTTGACGAAAATCTGCAT 400377 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || ||||||||||| || || | || | |||||||||| || Sbjct 400351 TGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCGTCTTCAAGTTGT 400292 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || | | ||||||||| || ||||| || || || || || | |||| Sbjct 400291 TTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTG-AATTTT 400233 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | || || | ||||| || | ||| | |||||| || || Sbjct 400232 AGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCCAAAGTGATGGTCTTTCCAGT 400173 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || |||||||||||||| Sbjct 400172 CAACGTCTTGACGAAAATTTGCAT 400149 >seq1125 Length=2998257 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| ||| ||||| || || |||||||| || || | ||| || |||| Sbjct 292763 AAGGACAAGGTGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTC 292822 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||| ||||| |||| | ||||||||||| || || |||||||| || || Sbjct 292823 TTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 292882 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || ||| | || || || | || | || Sbjct 292883 CTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGT 292942 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| || || | ||||| ||||| || ||||| || Sbjct 292943 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 292978 >seq1208 Length=4595443 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 ||| ||||| || || |||||||||||||| | ||| || ||||| ||||| || || Sbjct 3925548 CGTTGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGACAATCTTCCAGCTGTTTACC 3925489 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| | || | | |||||||| ||||||| |||| || || || || ||| ||| Sbjct 3925488 GGCGAAGATTAATCTTTGCTGGTCCTGAGGAATGTCTTCCTTGTCCTGAATCTTTGCCTT 3925429 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | |||||| | || | || | ||| | ||||||||| || | || Sbjct 3925428 AACATTGTCGATAGTATCAGAGCTCTCTATCTCGAGAGTAATGGTCTTGCCAGTGAGTGT 3925369 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| |||||||||||||| Sbjct 3925368 TTTCACGAAAATTTGCAT 3925351 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||| | || || || ||||| ||||||||||| |||| ||||| | || Sbjct 3926019 AAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGTCCATC 3925960 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||| |||| | | ||||| | ||||||||| || || || || || || || Sbjct 3925959 TTCGAGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTC 3925900 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 | || || ||| ||| || | ||| || | | || || || | ||| | ||| Sbjct 3925899 CTCAATCTTCGCCTTGACATTATCGATTGTGTCTGAGCCCTCAACCTCCAAAGTAATGGT 3925840 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || || || || ||||||||||| Sbjct 3925839 CTTTCCAGTACGGGTCTTCACAAAAATTTGCAT 3925807 >seq204 Length=2333866 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||||| || |||||||| || ||||||||||| |||| || | |||| Sbjct 1139348 AAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTC 1139289 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || ||||| | || | || ||||| || || || |||||||| || || Sbjct 1139288 TTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGGATTCCTTCCTTGTC 1139229 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | || ||||| ||| || | ||| || | || || |||| |||| | Sbjct 1139228 TTGGA-TCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACCTCTAGGGTTATTG 1139170 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||| || || | ||||| ||||| || |||||||| Sbjct 1139169 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 1139133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499632658631360