Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1396 111 2e-19 seq793 98.7 1e-15 seq1328 96.9 3e-15 seq236 96.9 3e-15 seq1177 93.3 4e-14 seq1125 87.8 2e-12 >seq1396 Length=1446835 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||||| || || || | | |||||||| |||||||||||||| | Sbjct 400375 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 400316 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||| || |||||||| || | | |||| | | ||| |||||||| || Sbjct 400315 AAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGA 400256 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| |||| | ||| |||| || | |||||||| ||||| Sbjct 400255 ATACCCTCCTTGTC-CTGAATTTTAGCTTTGACATTG-TCGATGGTGTCGGAGCTCTCCA 400198 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||||| || || || ||||| ||||| Sbjct 400197 CCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||| ||||| || ||| || ||||| || ||||| || | Sbjct 400798 GACTCCTTCTGGATGTTATAGTCAGCCAAAGTGCGACCATCCTCAAGCTGTTTGCCAGCG 400739 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||||||||| |||||||| ||||| ||| || || | Sbjct 400738 AAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCACG 400679 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||| | || | ||||| ||||||| ||| || Sbjct 400678 TTGTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTTTTGCCAGTCAAAGTCTTG 400619 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 400618 ACGAAGATCTGCATG 400604 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | || ||||| || ||||||||||| | Sbjct 401059 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCC 401000 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| ||||| || | |||| |||||||| ||||| ||||| Sbjct 400999 AGTGTGCGACCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 400940 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||||| ||||||| Sbjct 400939 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACC 400880 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || | ||| || || ||||||||||| Sbjct 400879 TCCAGTGTGATGGTCTTCCCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | |||||| || || || | | ||||||| || || |||||||| || Sbjct 400604 GCCACCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGC 400545 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| ||||| | || || |||| | |||| | | ||| ||||||||||| Sbjct 400544 CAAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGG 400485 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| || || ||| | || | || | ||| || | |||||| | |||| Sbjct 400484 GATTCCTTCCTTATC-CTGAATCTTGGCCTTCACGTTG-TCGATGGTGTCTGAGCTCTCC 400427 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||| ||||| || || ||||||||||| Sbjct 400426 ACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 400377 >seq793 Length=772624 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || || | ||| || || | | | || || || ||||||||||| ||| | Sbjct 610933 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCC 610874 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || |||||||||| |||||| | || ||||||||||| Sbjct 610873 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGA 610814 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| ||| || | |||| || | |||||| | ||| || Sbjct 610813 ATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTG-TCGATGGTGTCAGAGCTCTCAAC 610755 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || ||||| || ||||| || ||||| ||||| Sbjct 610754 CTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||||||||| | ||| | ||| || || || ||||||| | Sbjct 611128 GATTCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCA 611069 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || ||||||||||| || ||||| ||||| ||| ||| ||| | Sbjct 611068 AAGATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCTTTGACG 611009 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | ||| ||||| | || | || || ||||||||||| || Sbjct 611008 TTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTG 610949 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 610948 ACAAAGATCTGCAT 610935 >seq1328 Length=1576597 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 138391 CCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATA 138450 |||| ||| | | ||| || || | | |||||||||||||||| |||| || || | Sbjct 273104 CCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAAA 273045 Query 138451 GTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATA 138510 ||||| || || || |||||||||| | | || || | ||| ||||||||||| || Sbjct 273044 GTACGGCCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATT 272985 Query 138511 CCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTC 138569 ||||| || || ||| ||| || | |||| || | ||||||| || ||||| Sbjct 272984 CCTTCCTTATCTTGGATCTTTGCCTTAACATTG-TCAATTGTGTCGGAGCTTTCAACCTC 272926 Query 138570 GACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || || || || ||||| |||||||| || ||||| Sbjct 272925 AAGAGTTATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||| || | ||||| ||||||||||| ||||||| Sbjct 273304 TTGACTCCTTCTGGATGTTGTAATCCGCAAGCGTACGACCATCCTCGAGTTGCTTACCGG 273245 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| || | ||| ||||| ||||| || |||||||| || ||| || || | Sbjct 273244 CAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTATCTTGGATCTTGGCCTTGA 273185 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||| || | || ||||| | || | || || || || ||||| | Sbjct 273184 CGTTATCGATGGTATCTGAGCTTTCGACCTCAAGTGTTATAGTCTTCCCTGTAAGAGTCT 273125 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 273124 TAACAAAGATCTGCAT 273109 >seq236 Length=1640546 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || |||||||||||| | ||| || ||| ||||| ||||| |||| Sbjct 1089230 TTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCGG 1089171 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | || | ||||| |||||||| || || ||||| ||||| ||| || ||| | Sbjct 1089170 CGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCA 1089111 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | ||||| ||||| | || | || || || || || ||| Sbjct 1089110 CATTG-TCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 1089052 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 1089051 TTCACGAAGATCTGCAT 1089035 >seq1177 Length=2734319 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || || | ||| || || | | |||| || || || |||||||| ||| | Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || |||||||||| |||| | | || ||||||||||| Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| ||| || | |||| || | |||||||| ||| || Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTG-TCGATGGTGTCGGAGCTCTCGAC 987775 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || |||||||| || ||||| || ||||| ||||| Sbjct 987774 CTCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq1125 Length=2998257 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || |||||||||||| | || || ||| ||||| || || |||| Sbjct 292780 TTGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCTTCGAGCTGCTTTCCGG 292839 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | || | ||||| |||||||| || || ||||| ||||| ||| || || | Sbjct 292840 CGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA 292899 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | ||||| ||||||| || | || || || || || ||| Sbjct 292900 CATTG-TCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTT 292958 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 292959 TTCACGAAGATCTGCAT 292975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250340823680