Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq204 125 5e-24 seq1396 109 4e-19 seq236 96.9 2e-15 seq1177 93.3 3e-14 seq793 93.3 3e-14 >seq204 Length=2333866 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || ||||| || |||||||||||| ||| |||| ||||||| Sbjct 1139344 ACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTCTTCC 1139285 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| || ||| | || ||||| || || || ||| |||||||||||||| Sbjct 1139284 AATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGG 1139225 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || || ||| ||| || |||| ||| || || || Sbjct 1139224 ATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACCTCTAGGGTTATTGTCTTC 1139165 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 || || || ||||| || || || ||||| |||| Sbjct 1139164 CCCGTTAGGGTTTTCACGAAGATCTGCATTTTTG 1139131 >seq1396 Length=1446835 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| ||||| || || || |||||||| || | | |||| ||||| Sbjct 400360 AAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCGTCT 400301 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| ||||| | ||||| | ||| ||||| |||||| || |||||||| Sbjct 400300 TCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCC 400241 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| ||| ||| | || || || ||| | || || || || || ||||| Sbjct 400240 TGAATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCCAAAGTGATGGTC 400181 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| || || || |||||||||||| Sbjct 400180 TTTCCAGTCAACGTCTTGACGAAAATTTGCATA 400148 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | ||| | ||||||||| || || || || |||||||| || | Sbjct 400147 CCACCACGGAGCCTGAGAACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCG 400088 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| |||| || | ||| || || ||| | ||||| | || || || ||| Sbjct 400087 AGGGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCCGGTGGG 400028 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| || || ||| || | || || || || |||| || Sbjct 400027 ATACCCTCCTTGTCCTGGATCTTAGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACC 399968 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| || || || || || || ||||| || |||||||||||| Sbjct 399967 TCGAGGGTGATAGTCTTCCCAGTTAGGGTTTTGACGAAAATTTGCATA 399920 >seq236 Length=1640546 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| ||| |||| | | ||||||| | || Sbjct 1089238 ATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTG 1089179 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | ||||| ||||| ||||| ||| |||||||||||||| || || Sbjct 1089178 TTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 1089119 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || || || || || || |||| ||| ||||| || || || Sbjct 1089118 CGCTTTCACATTGTCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGT 1089059 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| || || || ||||| ||| Sbjct 1089058 TAGGGTTTTCACGAAGATCTGCATCTTT 1089031 >seq1177 Length=2734319 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | ||| || || ||||| || ||||| || |||||||||||| Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||||| ||||| || ||| | ||||| | || ||||| ||| Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| || ||||| || ||| | || || || ||| | || || Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGCCTTA-ACATTGTCGATGGTGTCGGAGCTCTCGAC 987775 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| ||||| || || ||||| || ||||||||||| Sbjct 987774 CTCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq793 Length=772624 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||||| |||||||| || ||| |||| ||||||| | || Sbjct 611137 TGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCAAGCTGC 611078 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || || || | || | | || ||||| || |||||||||||||| || ||| Sbjct 611077 TTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTT 611018 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| || | || |||||||| | || || || || |||||||| || || || Sbjct 611017 GC-TTTGACGTTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTGCCAGT 610959 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 |||||| || ||||| || |||||| Sbjct 610958 CAGAGTCTTGACAAAGATCTGCATA 610934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357383532490040