Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1396 136 4e-27 seq1177 134 1e-26 seq793 125 7e-24 seq1125 105 6e-18 seq1208 95.1 1e-14 seq236 95.1 1e-14 seq1328 89.7 5e-13 >seq1396 Length=1446835 Score = 136 bits (150), Expect = 4e-27 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || || || || |||||||||||||| ||| ||| || ||| ||| Sbjct 399901 ACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGGCCATCCTCT 399842 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||||||| |||| | | ||||||||| ||||| |||||||||||||| | Sbjct 399841 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGG 399782 Query 127025 ATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || || |||| | |||| |||| ||||| | || || || |||| ||| | || | Sbjct 399781 ATCTT-GGCTTTAACGTTG-TCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCT 399724 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| ||||| || || || |||||||| Sbjct 399723 TTCCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| || | || |||||||| || || |||||||| || Sbjct 400603 CCACCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCC 400544 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||| ||||| || ||||||| | |||||| || ||||| Sbjct 400543 AAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGG 400484 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| || || ||| | ||||| ||| |||||| | ||||| || Sbjct 400483 ATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTGT-CGATGGTGTCTGAGCTCTCCAC 400425 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || ||||| || || ||||||||||| Sbjct 400424 CTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 400377 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| ||||| || | |||||||| || ||||| ||||| || ||| || | Sbjct 400363 CGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCG 400304 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || ||||||||||| ||||||||| |||||| || || || || ||||||||| Sbjct 400303 TCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCCTTG 400244 Query 127019 TCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| || |||| | |||| |||||| | ||||| || || | || | Sbjct 400243 TCC-TGAATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCCAAAGTGAT 400185 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||| || || || ||||| ||||| Sbjct 400184 GGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || || || || || ||||| || || Sbjct 401059 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCC 401000 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||||||||||||| |||| | |||||||| || ||||| Sbjct 400999 AGTGTGCGACCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 400940 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| || ||| | ||||| | | |||||| | ||||| || Sbjct 400939 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGT-CAATGGTGTCGGAGCTCTCCAC 400881 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||| | ||| || || ||||||||||| Sbjct 400880 CTCCAGTGTGATGGTCTTCCCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || ||||| ||| ||||||||| |||||||| || || || ||||||||| Sbjct 400075 TCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCCGGTGGGATACCCTCCTTG 400016 Query 127019 TCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 ||| ||| || |||| | |||| |||| ||||| | || || || |||| ||| | Sbjct 400015 TCCTGGATCTT-AGCTTTAACGTTG-TCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGA 399958 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| || ||||| ||||| Sbjct 399957 TAGTCTTCCCAGTTAGGGTTTTGACGAAAATTTGCAT 399921 >seq1177 Length=2734319 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||| || | ||||| || | || || ||||| || || ||||||||| || Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| ||||||||||| || ||| ||||||||| ||||| || ||||| Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| ||| || ||| | | |||| |||||| | |||||||| Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACC 987774 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || || ||||| || ||||| ||||| Sbjct 987773 TCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq793 Length=772624 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||| || | ||||| || | || || ||||| ||||| ||||||||| || Sbjct 610933 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCC 610874 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| ||||||||||| || ||| |||| |||| ||||| || ||||| Sbjct 610873 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGA 610814 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| || || ||| ||| || ||| | | |||| |||||| | ||||| || Sbjct 610813 ATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 610754 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| || || ||||| || ||||| ||||| Sbjct 610753 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq1125 Length=2998257 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| || || || || || ||||| ||| | | || || || || ||||| ||||| Sbjct 292778 CGTTGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCTTCGAGCTGCTTTCC 292837 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| | |||||||||||||| || || || || || ||||||||| ||| || ||| Sbjct 292838 GGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTT 292897 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | |||| |||||| | | |||||| |||| ||| | || || || || || || Sbjct 292898 GACATTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGT 292957 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || || |||||||| Sbjct 292958 TTTCACGAAGATCTGCAT 292975 >seq1208 Length=4595443 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | |||||||| ||||| || |||||||| | | ||||| ||| || Sbjct 3926016 CACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGTCCATCTTC 3925957 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || | |||| | || |||||| || || || || |||||||||||| Sbjct 3925956 GAGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTC 3925897 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || ||| ||||| | |||| ||||| | | ||| || || | || | || || Sbjct 3925896 AATCTTCGCCTTGACATTATCGATTGTGTCTGAGCCCTCAACCTCCAAAGTAATGGTCTT 3925837 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || || |||||||| ||||| Sbjct 3925836 TCCAGTACGGGTCTTCACAAAAATTTGCAT 3925807 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | || ||||||||||| || ||||| || | | ||| || ||| || Sbjct 3925788 CACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCAAGTGTGTGACCATCCTC 3925729 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||| || ||| | |||| | |||||| || ||||| || || ||||||| | | Sbjct 3925728 TAGCTGCTTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGGGATTCCTTCCTTGT-CTT 3925670 Query 127024 GATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTT 127081 || | | |||| | |||| || | || || | || || || || | || | ||| Sbjct 3925669 GAATCTTAGCTTTAACGTTG-TCAATAGTATCAGAGCTTTCAACCTCCAAAGTGATGGTT 3925611 Query 127082 TTGCCGGTCAGAGTTTTTACAAAAATCTGC 127111 ||||| |||| || || ||||| |||||| Sbjct 3925610 TTGCCTGTCAACGTCTTCACAAAGATCTGC 3925581 >seq236 Length=1640546 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | || | ||| | ||| || || || || || ||||| ||| Sbjct 1089264 GCACCACCACGGAGACGGAGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCG 1089205 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | ||||| || || |||||||| || ||| | |||||||||||||| || || Sbjct 1089204 GCGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGT 1089145 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || |||||||| ||| ||| || | | |||| |||||| | |||| Sbjct 1089144 GGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATGGTGTCTGAGGACTCG 1089085 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || || || ||||| || || |||||||| Sbjct 1089084 ACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1089035 >seq1328 Length=1576597 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| ||||||||||||| ||| ||| || || ||| || Sbjct 273089 ACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAAAGTACGGCCATCTTCA 273030 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| || || | || | || |||||| || ||||| || || ||||| || | Sbjct 273029 AGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCTTGG 272970 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | || | ||||| | || || || || | || | || ||| Sbjct 272969 ATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCTCAAGAGTTATGGTCTTG 272910 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || ||||| |||||||| || ||||| Sbjct 272909 CCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489245330560