Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1177 116 3e-21 seq1125 114 1e-20 seq1208 111 1e-19 seq236 109 5e-19 seq204 109 5e-19 seq793 107 2e-18 seq1396 104 2e-17 >seq1177 Length=2734319 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || |||||||| || ||||| || |||||| | ||| ||| || | ||| Sbjct 987929 TGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCTAGCTGT 987870 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||||| |||||||||||| ||||||||||| || || || || ||| Sbjct 987869 TTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTT 987810 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | ||||||||| |||||| || ||||| | || || || ||| Sbjct 987809 GCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGAGTGATGGTCTTACCAGTT 987750 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || |||||||||||| Sbjct 987749 AGTGTTTTCACGAAAATTTGCATC 987726 >seq1125 Length=2998257 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || |||||||||||||| ||||| || || ||| Sbjct 292749 CCACCACGGAGACGAAGGACAAGGTGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCT 292808 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || || | || ||||| ||| | |||||||| ||||||||||| || Sbjct 292809 AAGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG 292868 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || || |||| || | |||||| ||||||||||| Sbjct 292869 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGACC 292928 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | || || || ||||| ||||| || || || |||||| Sbjct 292929 TCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 292976 >seq1208 Length=4595443 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || |||||||||||||| ||||| || ||||| | ||| | |||| |||| ||| Sbjct 3925553 TGGAGCGTTGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGACAATCTTCCAGCTGT 3925494 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || |||| |||||||||| | |||||| |||| || || ||||| ||| Sbjct 3925493 TTACCGGCGAAGATTAATCTTTGCTGGTCCTGAGGAATGTCTTCCTTGTCCTGAATCTTT 3925434 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | || || || ||| | |||||||||| || ||||| || Sbjct 3925433 GCCTTAACATTGTCGATAGTATCAGAGCTCTCTATCTCGAGAGTAATGGTCTTGCCAGTG 3925374 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || |||||||||||| Sbjct 3925373 AGTGTTTTCACGAAAATTTGCATC 3925350 >seq236 Length=1640546 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || ||||| |||||||||||||| ||||| || || ||| | Sbjct 1089261 CCACCACGGAGACGGAGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCG 1089202 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | ||||| || ||| | |||||||| ||||||||||| || Sbjct 1089201 AGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG 1089142 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || ||||| || || ||| | || | |||||| || |||||||| Sbjct 1089141 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATGGTGTCTGAGGACTCGACC 1089082 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || ||||| ||||| || || || |||||| Sbjct 1089081 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 1089034 >seq204 Length=2333866 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || |||||||| || ||||| || |||||| || ||| | || || Sbjct 1139345 CACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTCTTC 1139286 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 |||||||||||| ||| | || || |||||||| ||||| || || ||||| || ||||| Sbjct 1139285 CAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTG 1139226 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||| | || | |||||||| || || || || || || | || || Sbjct 1139225 GATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACCTCTAGGGTTATTGTCTT 1139166 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || || || ||||| Sbjct 1139165 CCCCGTTAGGGTTTTCACGAAGATCTGCAT 1139136 >seq793 Length=772624 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| || || || || |||||| | ||| ||| || | ||| Sbjct 610909 TGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCTTCTAGCTGT 610850 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || |||| |||||||||||| ||||||||||||||||| || || ||| Sbjct 610849 TTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGAATGCCTTCTTTATCCTGGATCTTT 610790 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | |||||| || ||| || |||||||| | || ||||| || Sbjct 610789 GCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTTGCCAGTG 610730 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || |||||||||||| Sbjct 610729 AGTGTTTTCACGAAAATTTGCATC 610706 >seq1396 Length=1446835 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | || ||||| || ||||| ||||| ||||| || || || Sbjct 400150 ATACCACCACGGAGCCTGAGAACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCA 400091 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| | || || | ||| ||||| ||| | ||||||| |||||| ||||| Sbjct 400090 GCGAGGGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCCGGT 400031 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || || || || ||| | || | || | ||||| || || Sbjct 400030 GGGATACCCTCCTTGTCCTGGATCTTAGCTTTAA-CGTTGTCGATTGTGTCAGAGCTTTC 399972 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || || ||||| ||||| || ||||||||||| Sbjct 399971 CACCTCGAGGGTGATAGTCTTCCCAGTTAGGGTTTTGACGAAAATTTGCAT 399921 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | ||| || | || || || || ||||| || || || || || Sbjct 400378 ATACCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCA 400319 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | ||||||||| || | ||||||| ||||||||||| Sbjct 400318 GCCAAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGT 400259 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || |||||||| ||||| || | ||||||||| ||| Sbjct 400258 GGAATACCCTCCTTGTCCTGAATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCC 400199 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || || || || | || || || ||||||||||| Sbjct 400198 ACCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451992216322240