Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq178 132 6e-26 seq3 93.3 5e-14 >seq178 Length=2153606 Score = 132 bits (146), Expect = 6e-26 Identities = 141/185 (76%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 7991 AGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGA 8050 || ||||||||||| || |||| |||| ||| ||||||| ||||||||||| || ||| Sbjct 356755 AGAATGTTGTGCTCAGCCTGGAGTACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGA 356696 Query 8051 GGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGC-AGATGC 8109 |||||| | ||||| ||| || || || | ||||||| | ||| ||||| || || Sbjct 356695 GGCATACCATCAGAAAAACTTCCCTGCCCAATTGGATAGATCAAGAAAACAGCAAGTCGC 356636 Query 8110 TGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGA 8169 || ||||| |||| || ||||| ||| ||||| ||||||||||| |||||| || Sbjct 356635 AGCTGCAACAGGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACT 356576 Query 8170 AAGTT 8174 ||||| Sbjct 356575 AAGTT 356571 >seq3 Length=3374423 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| ||||| || |||| || || || |||||||||||||||||||| Sbjct 1009854 GTAGGATAAGCCACACAAGTGAGAACAAACCCTTGATTAATCTGGTCATCATCAAGGAAA 1009913 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || | || || | ||| || ||||| |||||||| | | Sbjct 1009914 CTCTGGTCAGACTGGTCAACAGATCCAGACGCAACTTTACCAGCACAGCTCGAACAAGAA 1009973 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | || || || ||||| ||||| ||||| |||| ||| Sbjct 1009974 CCAGCACGGCAAGAGTAAGGCAAATCGATTCCAGCTTCCTCAGCCGCATCAAGAACGTAA 1010033 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| ||||||||| Sbjct 1010034 ACGTCGTCGTCACACTCAA 1010052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622109682367360