Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1639 96.9 4e-15 >seq1639 Length=5101707 Score = 96.9 bits (106), Expect = 4e-15 Identities = 181/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| | ||| || ||||| | || ||||||||||| || ||| Sbjct 2279772 CCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGACCTCGTTTC 2279831 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | ||||| |||||||||||||| || || ||||| ||||| Sbjct 2279832 TTAAGCCAGAAGATGGAGCAAAAGCTTCCAGAGAAGAAGATGCCTTCAACACAAGCGAAA 2279891 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | || || || |||| | || | || | ||| |||||||||||||| Sbjct 2279892 GCTACAATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 2279948 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 127775 || || ||| ||| || || | || | ||||| ||| || | | ||| | | || Sbjct 2279949 GCTTTCTTCGCGACGCAAGGAATCGTTTCAATCGCGCGAAATAGATGATCTCTCTCTTTG 2280008 Query 127776 ATGGATCTTTGATGTACTTATC 127797 | ||||||||| ||| |||| Sbjct 2280009 TT--ATCTTTGATATACGTATC 2280028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613492291775040