Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1396 159 8e-34 seq793 154 3e-32 seq1125 143 6e-29 seq1177 134 3e-26 seq1328 125 2e-23 seq1208 122 2e-22 seq236 116 9e-21 seq204 111 4e-19 seq1470 93.3 1e-13 seq146 91.5 3e-13 seq861 89.7 1e-12 seq971 86.0 1e-11 >seq1396 Length=1446835 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||| | ||| || || ||||| || |||| |||||| || ||||| || Sbjct 400597 CGAAGACGCAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCCAAGGTA 400538 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||||||||| ||||| | | ||||||||||||| |||||| Sbjct 400537 CGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCT 400478 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||| |||| |||||||| | || || ||||| Sbjct 400477 TCCTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCCAAG 400418 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||| || || ||||| || Sbjct 400417 GTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTG 400380 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| || || || | ||| || ||||||||||| |||| ||| |||||||||||||| Sbjct 400825 CGAAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAAGTG 400766 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||| || || ||||||||||||||||||||||||||| ||| ||| Sbjct 400765 CGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCT 400706 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | |||||| | | || || ||||| Sbjct 400705 TCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCCAAG 400646 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||| || || || || || Sbjct 400645 GTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTG 400608 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || ||||| ||||| |||| |||||||||||||| || | || || Sbjct 401044 AGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCC 400985 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| ||||| ||||||||||||||||||||||| ||| || ||||| ||| Sbjct 400984 TCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCC 400925 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| || | |||||| | | || || |||| ||||| ||| Sbjct 400924 TGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTC 400865 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| ||||| ||||| || Sbjct 400864 TTCCCGGTTAAAGTCTTCACGAAAATCTG 400836 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | ||| || || |||||||| || | |||||||||||||||||| Sbjct 400369 CGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTT 400310 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || ||||| || || ||||| || ||||| | | |||||||||||| ||| || Sbjct 400309 CTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCC 400250 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || |||||||| ||| || || || |||| |||||| | | || || ||||| Sbjct 400249 TCCTTGTCCTGAAT-TTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCCAA 400191 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || |||||||| Sbjct 400190 AGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTG 400152 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || || ||||| | ||||| || || ||||| || | ||||| |||||||| || Sbjct 399913 CGGAGCCTTAGGACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTA 399854 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||||||||| |||||||| || | |||||| |||||| ||| || Sbjct 399853 CGGCCATCCTCTAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCC 399794 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| || ||| |||| ||||| | |||| || || | Sbjct 399793 TCCTTGTCTTGGATCTTGGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGG 399734 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||| || || || || || Sbjct 399733 GTGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTG 399696 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || || || ||||| || || || |||||||| |||| |||||||||||| | || Sbjct 400141 CGGAGCCTGAGAACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTT 400082 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || || || || ||||||||||||||||| | | ||||| ||||| || || Sbjct 400081 CTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGATCCGGTGGGATACCC 400022 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| || ||| |||| ||||| | |||| || || | Sbjct 400021 TCCTTGTCCTGGATCTTAGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGG 399962 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || ||||| || |||||||| Sbjct 399961 GTGATAGTCTTCCCAGTTAGGGTTTTGACGAAAATTTG 399924 Score = 98.7 bits (108), Expect = 2e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| ||||||||||||||||| ||||| | || ||||| ||||||||| |||||||| Sbjct 400506 ATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCTTGGCGGATTACAACATCCAGAAA 400565 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| || |||||| | || ||| | ||||| Sbjct 400566 GAGTCAACCCTTCACTTGGTCTTGCGTCTTCG 400597 >seq793 Length=772624 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| || ||||| |||||||||| |||||||||||| | ||| Sbjct 611155 CGAAGACGAAGGACAAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCAGCAAGAGTT 611096 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||| ||||| |||||||| ||||| |||||||| | |||||||||||| |||||| Sbjct 611095 CTTCCGTCTTCAAGCTGCTTACCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATTCCT 611036 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| || ||| || | || || | | || || ||||| Sbjct 611035 TCCTTGTCCTGGATCTTTGCTTTGACGTTGTCAATAGTATCAGAGCTCTCAACCTCCAAA 610976 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || ||||| || || Sbjct 610975 GTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTG 610938 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| ||||| || || || | |||||| || ||||| || | |||||| Sbjct 610918 AGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCT 610859 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || ||||||||||| | | |||||||||||| ||| |||||| ||| Sbjct 610858 TCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGAATGCCTTCTTTATCC 610799 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 610798 TGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTC 610739 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| |||||||| |||||||| Sbjct 610738 TTGCCAGTGAGTGTTTTCACGAAAATTTG 610710 >seq1125 Length=2998257 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || || ||||| |||| ||||||||| || || || | ||| ||| Sbjct 292764 AGGACAAGGTGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCT 292823 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||| || | |||||||||||||| |||||||| ||| Sbjct 292824 TCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCC 292883 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 292884 TGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTC 292943 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || |||||||| || || || Sbjct 292944 TTCCCCGTTAGGGTTTTCACGAAGATCTG 292972 >seq1177 Length=2734319 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || || || || |||| |||||| || ||||| || | |||||| Sbjct 987938 AGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCT 987879 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || ||||||||||| | | |||||||||||| ||| ||||| ||| Sbjct 987878 TCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 987819 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 987818 TGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGAGTGATGGTC 987759 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || |||||||| |||||||| Sbjct 987758 TTACCAGTTAGTGTTTTCACGAAAATTTG 987730 >seq1328 Length=1576597 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || || || | |||||| || ||||||||||| | |||| ||||||||||| | ||| Sbjct 273095 CTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCAGCCAAAGTACGGCCA 273036 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||| ||||| || ||||| || || || | ||||||||||||| |||||||| Sbjct 273035 TCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGAGGGATTCCTTCCTTA 272976 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || || |||||| ||| || || | ||||| | |||| || || | || || Sbjct 272975 TCTTGGATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCAACCTCAAGAGTTATG 272916 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || ||||| ||||| Sbjct 272915 GTCTTGCCCGTAAGAGTCTTTACAAAGATTTG 272884 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || || ||||||||||||||||| | ||| | ||||| || || || Sbjct 273540 TGCAGAGTTGATTCTTTCTGGACGTTGTAGTCAGCAAGAGTGCGACCATCCTCAAGATGT 273481 Query 199487 TTTCCGGCGAAGAT-GAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || || |||||||| || | ||| ||||| | ||||||||| || |||||||| Sbjct 273480 TTGCCAGCGAAGATAAAGTCTCTGTTGGTCTAGTTGGATTCCTTCTTTTTCTTGAATCTT 273421 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || || | ||||| | | || || || | || || || || || || Sbjct 273420 CGCCTTGACATTGTCAATGGTGTGAGAGCTCTCAACTTCTAGAGTAATGGTTTTTCCAGT 273361 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| |||| |||||| ||||| Sbjct 273360 GAGGGTTTCCACAAACATTTG 273340 >seq1208 Length=4595443 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || ||||||||||||| |||||| ||||| | || | ||||||||| |||||| Sbjct 3926009 TGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGTCCATCTTCGAGCTGC 3925950 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || |||| |||||||| | ||||||||| || || || || |||| |||||| Sbjct 3925949 TTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTCAATCTTC 3925890 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || |||| ||||||| || || ||||| || || ||||| || || Sbjct 3925889 GCCTTGACATTATCGATTGTGTCTGAGCCCTCAACCTCCAAAGTAATGGTCTTTCCAGTA 3925830 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || |||||||||||||| Sbjct 3925829 CGGGTCTTCACAAAAATTTG 3925810 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || || ||||| |||| |||||| || ||||| || | | |||| Sbjct 3925562 AGAACCAAGTGGAGCGTTGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGACAATCT 3925503 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||||||||| | | ||||||||| || ||| |||| ||| Sbjct 3925502 TCCAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCTGAGGAATGTCTTCCTTGTCC 3925443 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| || |||| || || | | |||| || | || || ||| Sbjct 3925442 TGAATCTTTGCCTTAACATTGTCGATAGTATCAGAGCTCTCTATCTCGAGAGTAATGGTC 3925383 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| |||||||| |||||||| Sbjct 3925382 TTGCCAGTGAGTGTTTTCACGAAAATTTG 3925354 Score = 113 bits (124), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||||| ||| |||| |||||| ||||||||||||| ||||| Sbjct 3926242 AGAACCAAGTGAAGAGTCGACTACTTCTGGATGTTGTAATCAGCCAAAGTCCAACCATCC 3926183 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || | ||||||||||| | ||| | ||| | || || || ||| Sbjct 3926182 TCAAGCTGTTTCACAGCGAAGATGAGTCTCTGTTAGTCTTGTGGGATCCCCTCCTTGTCC 3926123 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||||||| | | || ||||| ||||| ||| Sbjct 3926122 TGAATCTTAGCCTTGACATTATCGATTGTGTCTGAGCTCCCGACCTCCAAAGTGATGGTC 3926063 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTT 199625 || ||||| || ||||||||||||| Sbjct 3926062 TT---TGTGAG-GTCTTCACAAAAATTT 3926039 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || ||||| ||||||| |||||||||||| | || ||||| || |||||| Sbjct 3925781 TGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCAAGTGTGTGACCATCCTCTAGCTGC 3925722 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || | ||||| || ||||||||||||| |||||||| || |||||||| Sbjct 3925721 TTACCACCAAAGATAAGCTTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATCTTA 3925662 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || ||| || | || || | |||| || ||||| ||||| || || || || Sbjct 3925661 GCTTTAACGTTGTCAATAGTATCAGAGCTTTCAACCTCCAAAGTGATGGTTTTGCCTGTC 3925602 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || |||||||| || || Sbjct 3925601 AACGTCTTCACAAAGATCTG 3925582 >seq236 Length=1640546 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || || || ||||| |||| ||||||||| || | ||| | || ||| Sbjct 1089246 AGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCT 1089187 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || |||||||| || | |||||||||||||| |||||||| || Sbjct 1089186 TCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCT 1089127 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| |||| |||||||| | || || || | || || ||| Sbjct 1089126 TGGATCTTCGCTTTCACATTGTCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTC 1089067 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || |||||||| || || || Sbjct 1089066 TTCCCCGTTAGGGTTTTCACGAAGATCTG 1089038 >seq204 Length=2333866 Score = 111 bits (122), Expect = 4e-19 Identities = 154/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || || |||| |||||| || || | || ||||| ||||||| || Sbjct 1139338 TGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTCTTCCAATTGT 1139279 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||||||||| | ||| ||||| ||||| |||||||| || || ||||| Sbjct 1139278 TTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTG 1139219 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||| |||| ||||| | || ||| || || | || || ||||| ||||| Sbjct 1139218 GCTTTCACATTGTCGATTGTGTCGGATGATTCAACCTCTAGGGTTATTGTCTTCCCCGTT 1139159 Query 199607 AGAGTTTTCACAAAAATTTGGTACATTTTAGCCTT 199641 || |||||||| || || || |||||| | ||| Sbjct 1139158 AGGGTTTTCACGAAGATCTG---CATTTTTGGCTT 1139127 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||||||||| || |||||||| ||||| || | |||||||||||| |||||||| Sbjct 1139265 ATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTACAACATCCAGAAA 1139324 Query 200998 GAGTCTACTCTTCA 201011 || || |||||||| Sbjct 1139325 GAATCAACTCTTCA 1139338 >seq1470 Length=2917085 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| |||||||||||||| | |||||| ||||| | |||| Sbjct 2171973 CGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCT----GTTGTAATCAGCAAGAGTC 2171918 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||| || || | | ||||| ||||| || | ||| ||| |||| |||||| Sbjct 2171917 CTTCCGTCATCAA---TAGTACCGGCAAAGATAAGTCTCTGATGGAACGGAGGGATTCCT 2171861 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||||||| || | || || | |||| || ||||| Sbjct 2171860 TCCTTGTCCTGTATCTTTGCCTTCACGTTATCAATAGTATCAGAGCTTTCAACCTCCAAA 2171801 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| || ||||| || || Sbjct 2171800 GTAATGGTTTTGCCTGTCAGAGTCTTGACAAAGATCTG 2171763 >seq146 Length=739853 Score = 91.5 bits (100), Expect = 3e-13 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| |||||| ||||||||||| | |||||||| ||||| |||||||||||| Sbjct 703210 CCTTTCTGGATGTTGTAATCAGCCAAAGTACGGCCATCTTCGAGCTGTTTTCCGGCGAAG 703269 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || | |||||||| |||||| |||||| Sbjct 703270 ATCAATCGCTGCTGATCCGGAGGGATTCCT 703299 >seq861 Length=1651656 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| || || | |||||||| | ||||||||| || | || Sbjct 430857 CGAAGACGCAACACAAGGTGAAGTGTTGTTTCCTTTTGAATGTTGTAGTCTGCAAGTGTG 430798 Query 199469 CTTCCATCTTCCAGCTGCTT--TCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTC 199526 | ||||| || |||||||| | | ||||||||||| | ||| | ||| || |||| Sbjct 430797 CGACCATCCTCAAGCTGCTTAGTTCAGCGAAGATGAGTCTCTGTTCGTCTGGTTGGATTC 430738 Query 199527 CTTCTCGCTCCTGAATCTTTTGCTTCAC 199554 |||| |||||||||||| |||||| Sbjct 430737 CTTCCTTGTCCTGAATCTTTGCCTTCAC 430710 >seq971 Length=4928269 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || || || || || ||||| | |||||||| | || || || ||||||||| ||||| Sbjct 3107553 CTGATATTTGCTGGTAAGCAACTCGAAGATGGCCGAACCTTAGCGGATTACAACATCCAG 3107494 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACT 201026 ||||||||||||||||| ||||| ||||| || Sbjct 3107493 AAAGAGTCTACTCTTCATCTTGTCTTGAGGCT 3107462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178892236010248