Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1125 116 4e-21 seq236 111 2e-19 seq1396 95.1 1e-14 seq1208 91.5 2e-13 seq793 89.7 6e-13 >seq1125 Length=2998257 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| || || || |||| ||||||||||| |||||||| Sbjct 292785 TCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 292844 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 292845 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 292904 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || || | ||||| || || ||||| || ||||| || Sbjct 292905 TCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACG 292964 Query 46583 AAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 292965 AAGATCTGCATCTT 292978 >seq236 Length=1640546 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| |||||||| |||| |||||||| || |||||||| Sbjct 1089225 TCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAA 1089166 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | |||||||| ||||||| || | | Sbjct 1089165 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTG 1089106 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || || | || ||||| || ||||| || ||||| || Sbjct 1089105 TCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACG 1089046 Query 46583 AAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 1089045 AAGATCTGCATCTT 1089032 >seq1396 Length=1446835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || ||||| | | |||||| | || || ||||| ||||| ||||| Sbjct 400796 CTCCTTCTGGATGTTATAGTCAGCCAAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAA 400737 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 400736 GATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGT 400678 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| |||| ||||| |||||||| |||| || | Sbjct 400677 TGTCAATGGTGTCAGAGCTC---TCCACCTCCAAGGTGATAGTTTTGCCAGTCAAAGTCT 400621 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||| ||||| Sbjct 400620 TGACGAAGATCTGCAT 400605 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| | || ||||| |||| |||||||| || || ||||| Sbjct 401023 TCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCCTCGAGCTGTTTTCCAGCGAAG 400964 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 400963 ATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGTT 400905 Query 46523 G-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| ||||| |||| |||||||| || || || | || || Sbjct 400904 GTCAATGGTGTCGGAGCTC---TCCACCTCCAGTGTGATGGTCTTCCCGGTTAAAGTCTT 400848 Query 46579 AACAAAGATTTGCAT 46593 || || || ||||| Sbjct 400847 CACGAAAATCTGCAT 400833 >seq1208 Length=4595443 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||| | ||||| ||| | ||| |||||||||||| ||||| || | Sbjct 3926033 CCACCTCCGAGACGAAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCG 3925974 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || ||||||||||| |||| || || | | ||||||||| | || Sbjct 3925973 AGTGTGCGTCCATCTTCGAGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGG 3925914 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | |||||||||| |||||| ||||| | | | ||||| || | || Sbjct 3925913 ATCCCCTCCTTGTCCTCAATCTTCGCCTTGACATTATCGATTGTGTCTGAGCCC---TCA 3925857 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || ||||| || || || | || || ||||| |||||||| Sbjct 3925856 ACCTCCAAAGTAATGGTCTTTCCAGTACGGGTCTTCACAAAAATTTGCAT 3925807 Score = 82.4 bits (90), Expect = 9e-11 Identities = 160/230 (70%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||| | ||||| ||| | ||| ||| |||||||| |||||||| | Sbjct 3925805 CCACCTCCGAGACGAAGCACCAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCAGCA 3925746 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCG-CTGCTGGTCGGCCGG 46485 || ||| | | || || |||||||| || | || || |||| ||||||||| | || Sbjct 3925745 AGTGTGTGACCATCCTCTAGCTGCTTACCACCAAAGAT-AAGCTTCTGCTGGTCCGGAGG 3925687 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC-GTGTC---GCTCGATT 46541 | | |||||||| ||||| ||| | ||| | || || || ||| || Sbjct 3925686 GATTCCTTCCTTGTCTTGAATCTTAG-CTTTAACGTTGTCAATAGTATCAGAGCT---TT 3925631 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGC 46591 | || |||| |||||||||||||| |||| ||| || |||||||| ||| Sbjct 3925630 CAACCTCCAAAGTGATGGTTTTGCCTGTCAACGTCTTCACAAAGATCTGC 3925581 >seq793 Length=772624 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| | ||||| | |||| || |||||||| ||||| || Sbjct 611125 TCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAG 611066 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | |||||||| | || | | ||||||||| |||||| | ||| ||| Sbjct 611065 ATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTT-TGCTTTGACGTT 611007 Query 46523 G-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | || || |||| || || |||| || ||||| ||||| ||||| || || Sbjct 611006 GTCAATAGTATCAGAGCTC---TCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTT 610950 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 610949 GACAAAGATCTGCAT 610935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565224664706880