Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq204 105 5e-18 seq1396 89.7 4e-13 seq1177 87.8 1e-12 >seq204 Length=2333866 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||| || |||||||| | ||| |||||| || || || |||||||| Sbjct 1139362 CCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCG 1139303 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | || ||||||||||| ||| | || |||||||| |||||||||| || Sbjct 1139302 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGG 1139243 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| | || || | | || |||| | |||||| | ||| | Sbjct 1139242 ATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCG--ATTGTGTCGGATGATTCAA 1139185 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || ||||| || ||||||| ||||| |||||||||||||| Sbjct 1139184 CCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1139136 >seq1396 Length=1446835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || ||||| || |||||| ||| |||| || | ||||| || | || Sbjct 400795 TCCTTCTGGATGTTATAGTCAGCCAAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAG 400736 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||||||| |||| || | ||||| ||||| || || || | ||| Sbjct 400735 ATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGTT 400677 Query 39649 GCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || |||| | ||| ||||| ||||| || || ||||| || || ||||| || || Sbjct 400676 GTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTTTTGCCAGTCAAAGTCTTGAC 400617 Query 39708 GAAGATCTGCATG 39720 ||||||||||||| Sbjct 400616 GAAGATCTGCATG 400604 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||||||| | ||| ||| || || ||||| ||||| ||||| || |||| Sbjct 399904 AGGACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGGCCATCC 399845 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | || || || | || || | | ||||||||||| || | ||| || ||||| Sbjct 399844 TCTAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCT 399785 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || ||||| ||| | | | |||||| | ||||||||| || | || || || Sbjct 399784 TGGATCTTGGCTTTAA-CGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGT 399726 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | ||| || |||||||||||||| Sbjct 399725 CTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 >seq1177 Length=2734319 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || || || ||||| || | || |||||| || || || ||||||||| Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | ||||| ||| | || || || | ||||| |||| || Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| || ||| ||| || |||| | ||||| | ||| || | Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCG--ATGGTGTCGGAGCTCTCGA 987776 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 987775 CCTCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347361369945752