Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq236 141 9e-29 seq1125 120 3e-22 seq1177 116 4e-21 seq1396 114 1e-20 seq204 105 7e-18 seq793 87.8 2e-12 seq1208 86.0 6e-12 seq1328 84.2 2e-11 >seq236 Length=1640546 Score = 141 bits (156), Expect = 9e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||| ||||| || ||||| ||||| || ||||| || ||||| ||| | || |||||| Sbjct 1089030 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTCGAGT 1089089 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || | |||| | | | | | |||| || |||| ||||| || ||||| || | | Sbjct 1089090 CCTCAGACACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGG 1089149 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| | |||| ||| || |||||||| || |||| ||||| ||| ||||| Sbjct 1089150 ACCAGCAGCGATTGATTTTCGCCGGGAAACAGCTCGAAGACGGCCGCACTCTCGCCGACT 1089209 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||| |||||| | ||||| ||| | || || ||| Sbjct 1089210 ACAACATCCAGAAGGAATCAACGCTTCATCTCGTCCTCCGT 1089250 >seq1125 Length=2998257 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||| ||||| || ||||| ||||| || ||||| || || |||||| |||| |||||| Sbjct 292980 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGT 292921 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | | |||| | | | | | || | || |||| ||||| || ||||| || | | Sbjct 292920 CTTCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCGG 292861 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| | |||| ||| || || ||||| || |||| || ||| | ||||| Sbjct 292860 ACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCTTAGCCGACT 292801 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||| |||||| | ||||| || | || || ||| Sbjct 292800 ACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGT 292760 >seq1177 Length=2734319 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || || |||||||| | || |||||| | || Sbjct 987727 ATGCAAATTTTCGTGAAAACACTAACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCC 987786 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | ||| |||| ||||| || || ||||| | ||||| Sbjct 987787 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 987846 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || |||||||| || || | |||||| | ||| |||||| Sbjct 987847 CAAAGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGCACCTTGGCCGATTACAAC 987906 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || || ||||| || || || ||||| || Sbjct 987907 ATCCAGAAAGAATCAACCCTCCACTTGGTTCTCCGGTTAAGAGGTGG 987953 >seq1396 Length=1446835 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || |||||||| | || || ||| | || Sbjct 400833 ATGCAGATTTTCGTGAAGACTTTAACCGGGAAGACCATCACACTGGAGGTGGAGAGCTCC 400892 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || || | ||||| Sbjct 400893 GACACCATTGACAACG-TGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGACCA 400951 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || |||||||| || |||| ||||| || |||||||| Sbjct 400952 GCAGCGTCTCATCTTCGCTGGAAAACAGCTCGAGGACGGTCGCACACTGGCTGACTACAA 401011 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| |||| || || ||||| || ||| Sbjct 401012 CATCCAGAAGGAATCGACCCTTCACTTGGTCCTCCGT 401048 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || |||||||| |||||| | || || ||| | | Sbjct 400605 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACTATCACCTTGGAGGTGGAGAGCTCT 400664 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | ||||| Sbjct 400665 GACACCATTGACAACG-TGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCA 400723 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||||||||| || || | ||||| | ||||| || Sbjct 400724 GCAGCGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGTCGCACTTTGGCTGACTATAA 400783 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| ||||| |||| || || |||||||| Sbjct 400784 CATCCAGAAGGAGTCGACCCTTCACTTGGTGCT 400816 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||| | || || || |||||||| | || || ||| | || Sbjct 400149 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTCC 400208 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||||| | ||||| ||||| ||||| | ||||| Sbjct 400209 GACACCATCGACAATGTCAAAGCTAAAATTCAGGACAAGGAGGGTATTCCACCGGACCAG 400268 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || || ||||| || || |||| | || | ||||||||| Sbjct 400269 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCAGAACTTTGGCTGACTACAAC 400328 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || ||||| ||||| || | || || Sbjct 400329 ATTCAGAAGGAGTCTACACTTCACTTGGTCTTGCGTCTGCGTGGAGG 400375 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || || || |||||| |||| || || | | Sbjct 399921 ATGCAAATTTTCGTCAAAACCCTAACTGGGAAGACTATCACCCTCGAGGTGGAAAGCTCT 399980 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||||| || |||| ||||| ||||| || || | || || Sbjct 399981 GACACAATCGACAACG-TTAAAGCTAAGATCCAGGACAAGGAGGGTATCCCACCGGATCA 400039 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | | || | ||| || || || || || |||| | |||||| |||||||| Sbjct 400040 GCAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGAACCCTCGCTGACTACAA 400099 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||| ||||| | || || ||| | || || Sbjct 400100 CATCCAGAAGGAGTCAACCCTTCATCTTGTTCT 400132 >seq204 Length=2333866 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| ||||| || ||||| || || || ||| | || || || | Sbjct 1139132 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATC 1139191 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | | |||| || |||| ||||| || ||||| || | || Sbjct 1139192 ATCCGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGA 1139251 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || | || | ||| || ||||| |||| |||| | || ||| ||| || Sbjct 1139252 TCAGCAACGTTTAATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTA 1139311 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || ||| | || || ||||||||||| ||| | ||||| || Sbjct 1139312 CAACATCCAGAAAGAATCAACTCTTCATTTGGTGCTTCGTCTTAGAGGAGG 1139362 >seq793 Length=772624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||| || | || || ||| | | Sbjct 610935 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAGGTTGAGAGCTCT 610994 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | |||| ||| |||| ||||| || ||||| || | ||||| Sbjct 610995 GATACTATTGACAACG-TCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCA 611053 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || ||||||| | || || || ||||| || |||| | || || |||||||| Sbjct 611054 GCAAAGGCTCATCTTTGCCGGTAAGCAGCTTGAAGACGGAAGAACTCTTGCTGACTACAA 611113 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| |||| || || | || || ||| Sbjct 611114 CATCCAAAAGGAATCGACCCTTCACCTTGTCCTTCGT 611150 >seq1208 Length=4595443 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| ||||| ||||| || |||| | ||| | | Sbjct 3925351 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGATAGAGAGCTCT 3925410 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||| | ||| || | ||||| || | ||||| ||||| Sbjct 3925411 GATACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGACATTCCTCAGGACCAG 3925470 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || ||||||||||| || || ||| | || |||||| Sbjct 3925471 CAAAGATTAATCTTCGCCGGTAAACAGCTGGAAGATTGTCGTACCTTGGCAGATTACAAC 3925530 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | ||||| || ||||| || || || |||| || Sbjct 3925531 ATCCAGAAGGAATCAACGCTCCACTTGGTTCTCCGGTTAGGAGGTGG 3925577 >seq1328 Length=1576597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || |||| ||||| || |||||||| || | || || ||| | | Sbjct 273337 ATGCAAATGTTTGTGGAAACCCTCACTGGAAAAACCATTACTCTAGAAGTTGAGAGCTCT 273396 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | | || | || || | || ||||| ||||| | |||||| Sbjct 273397 CACACCATTGACAATGTCAAGGCGAAGATTCAAGAAAAAGAAGGAATCCAACTAGACCAA 273456 Query 38364 CAGCGGCTC-ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | ||| |||||||| || || || | ||||| || |||||||| Sbjct 273457 CAGAGACTTTATCTTCGCTGGCAAACATCTTGAGGATGGTCGCACTCTTGCTGACTACAA 273516 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | |||| || ||| | || ||||||||||| || | | | ||||| || Sbjct 273517 CGTCCAGAAAGAATCAACTCTGCATTTGGTACTTCTTCTAAGAGGTGG 273564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160645800960