Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1690 307 8e-78 seq1502 224 7e-53 seq139 197 1e-44 seq861 192 4e-43 seq234 120 2e-21 seq1098 107 1e-17 seq1810 105 5e-17 seq410 105 5e-17 seq1340 87.8 1e-11 >seq1690 Length=820647 Score = 307 bits (340), Expect = 8e-78 Identities = 764/1146 (67%), Gaps = 18/1146 (2%) Strand=Plus/Minus Query 517162 AGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAAT 517221 ||||||| | ||| ||||||| | |||| ||| || | || | |||||| || Sbjct 130859 AGCTTCTTGCACCATCTTCTCAATCTCGTCTTTAGACAAACGACCCTTGTCATTAGTGAT 130800 Query 517222 AGTAATATTCTTGGATTTGTTTGTTGAT-TTATCAGCGGCAGTCACATTAAGAATACCAT 517280 || || || || ||||| | || | || || |||||| ||||| || ||||| | Sbjct 130799 TGTGATCTTGTTCT-TTTGTCCGGTGGTCTTGTCCTCGGCAGAGACATTTAGGATACCGT 130741 Query 517281 TGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCC 517340 |||| || | |||||| ||| || |||||||| || | |||| || ||||| | Sbjct 130740 TGGCGTCAATATCAAAGCAGACAGTGATCTGAGGGACACCGCGTGGAGCTGGAGGGATTC 130681 Query 517341 CTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGA 517400 | | | ||| | || || || || ||||| || || ||||| ||| Sbjct 130680 CAGAAAGCTCGAATTTACCGAGGAGGTTGTTGTCTTTGGTTCTAGCTCTCTCACCTTCGT 130621 Query 517401 AAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT- 517459 | | |||||| ||| | | ||||| ||||||||||| | || || ||| ||| Sbjct 130620 AGACTTGGATCAACACTCCGGGCTGATTGTCTGAATAAGTGGAGAAGAC-CTGTTCTTTC 130562 Query 517460 TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCT 517519 || ||||||||||||||||| | || | | ||||||| | |||||| |||||||| Sbjct 130561 TTGGTCGGAATTGTTGTGTTTCTTTGGATCAAAGTGGTCATGACACCACCAGCTGTTTCA 130502 Query 517520 AAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT 517579 | ||| || || ||||| |||||||||| | || || | ||||| || |||| | Sbjct 130501 AGACCGAGTGAGAGAGGTGTGACATCAAGCAAGAGAAGGTCTTGAACCTTCTCATTTCCT 130442 Query 517580 TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTA 517639 | ||| ||||| || || |||| ||| |||||||||||||| || |||||||| ||| Sbjct 130441 TCACCGGTTAGAATTGCAGCCTGAACAGCTGCACCATATGCAACGGCCTCATCAGGGTTA 130382 Query 517640 ACAG--TTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAG 517697 | || || || || | ||| |||||||| |||| | ||||| ||| || || | Sbjct 130381 ATAGACTTGCA--GAGCTCTTTGCCATTGAAGAAATCTTGGAGAAGCTGTTGAACTTTGG 130324 Query 517698 GAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTT 517756 | ||||| | || || || || | |||| ||||| | ||| | | || |||| || Sbjct 130323 GGATACGTGTAGAACCACCGACAAGAACAACATCATGGA-CTGAGCTCTTGTCCATCTTA 130265 Query 517757 GAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGT 517816 | ||| | | || ||||| || || | || | ||||| | || ||| Sbjct 130264 GCATCACGGAGACACTTCTCAACAGGCTCCATACACTTCCTAAAGAGATCCATGTTAAGC 130205 Query 517817 TCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCA 517876 ||||||||| |||| | |||| | ||| | ||||||||||| |||| ||| ||| Sbjct 130204 TCTTCGAATCTAGCACGGGTAATTGGAGCATAGAAGTCAATTCCTTCAAACAGAGAGTCA 130145 Query 517877 ACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTC 517936 | || || || ||||| | | ||||| || | | || || | || || ||||| Sbjct 130144 ATCTCGATGGTCGTTTGCGCGGTGGAAGAAAGAGTTCTCTTTGCTCTCTCGCAAGCTGTT 130085 Query 517937 CTTAGTCTTCGTAAGGCT-TTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAA 517995 || | || | || ||| | | | | | | | ||| | || | || ||||| || Sbjct 130084 CTCAACCTCCTTAGAGCTCTCGGGTTACCG-CTAATATCCTTCTTGTTCTTCCTCTTAAA 130026 Query 517996 ATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATT 518055 |||| |||| | | || | | ||||||||||||||||| || | | ||||| Sbjct 130025 CTCTTGAACAAAGTGGTTAACCATTCTGTTATCAAAATCTTCACCACCAAGATGAGTATC 129966 Query 518056 TCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATG 518115 ||| | || || | || | || | || ||||||| | | ||||| |||||| Sbjct 129965 TCCAGCTGTTGCCTTCACCTCAAAGATACCTTCTTCAATTGTAAGAAGAGAAACATCAAA 129906 Query 518116 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC-----TTGGTTT-TT 518169 || |||||||| | |||||| || || |||||| ||||| | ||| ||| || Sbjct 129905 AGTACCACCACCAAGATCAAAGATCAGAACATTCTTTTCTCCAACACTGGTTGCTTTCTT 129846 Query 518170 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 518229 ||||||||||| |||| |||||||||||| || || || || || | || |||||| | Sbjct 129845 GTCAAGACCATAAGCAATAGCAGCAGCAGTCGGCTCGTTGATGATACGCATAACATTCAA 129786 Query 518230 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 518289 |||||| || || || || || || ||||| | || || || || || || ||||| Sbjct 129785 ACCAGCGATCACACCAGCGTCCTTTGTAGCTTGACGCTGAGAGTCATTGAAGTAAGCAGG 129726 Query 518290 AACAGT 518295 |||||| Sbjct 129725 AACAGT 129720 Score = 219 bits (242), Expect = 3e-51 Identities = 692/1060 (65%), Gaps = 18/1060 (2%) Strand=Plus/Minus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 |||||| || ||||| ||||||||||| || | ||||| ||| || ||||||| Sbjct 124976 CGGCAGAGACGTTAAGGATACCATTGGCGTCAATGTCAAAGCAGACAGTGATCTGAGGGA 124917 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || | |||| || ||||| || | | ||| | || ||| || || || | Sbjct 124916 CACCGCGAGGAGCTGGAGGGATTCCAGATAGCTCGAATTTACCGAGAAGGTTGTTGTCCT 124857 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 517436 | || || ||||| ||| | | ||||| || ||| ||| || ||||| | Sbjct 124856 TGGTTCTGGCTCTCTCACCTTCGTACACCTGGATCAACACACCAGGTTGGTTGTCTGAGT 124797 Query 517437 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || | || || ||| || || ||||| || |||||||| || | | || Sbjct 124796 AGGTGGAGAAGAC-CTGTTCCTTCTTGGTTGGAATGGTCGTGTTTCTCGGGATCAAAGTG 124738 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | |||||| || ||||| | |||||| || |||||||||||||| | | | | Sbjct 124737 GTCATGACACCACCGGCAGTTTCCAGACCAAGGGAGAGAGGAGTGACATCGAGCAATAGA 124678 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || ||| | || || | || ||| ||||||||| | || | ||||||||| Sbjct 124677 AGATCTTGGACCTTCTCGTTTCCTTCACCGCTGAGAATAGCTCCCTGGACAGCAGCACCG 124618 Query 517616 TATGCAACAGCTTCATCAGGATTAACAG--TTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 || |||||||| |||||||| |||| || || || || | ||| || ||||| || | Sbjct 124617 TAGGCAACAGCCTCATCAGGGTTAATAGACTTGCAA--AGCTCTTTGCCGTTGAAGAAGT 124560 Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 ||| | ||| |||||||| ||||| | || || ||||| | |||| || | Sbjct 124559 CCTGAAGCAATTGCTGAACCTTAGGGATACGGGTGGAACCACCAACAAGGACAACATCGT 124500 Query 517734 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCC 517792 | || ||| | || |||| || | ||| | | || ||||| || || | || | Sbjct 124499 GGACA-GTGCTCTTGTCCATCTTAGCATCACGGAGACACTTCTCAACTGGCTCCATACAC 124441 Query 517793 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 517852 ||| |||| || || || || ||| |||| | || | ||| | || || Sbjct 124440 TTTCTGAACAGATCCATGTTGAGCTCCTCAAATCTAGCACGGGTGATGGTGG-AGTAGAA 124382 Query 517853 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 517911 ||||| || ||| | | |||||| | ||||| || || |||| | || || || | Sbjct 124381 GTCAATACCCTCGTAGAGAGAATCGATCTCAATGGTGGTCTGAGCGGTGGAGGAAAGAGT 124322 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTGATTCA 517970 | || || | ||||| || || || | || | |||| ||| ||| | | | | Sbjct 124321 CCTCTTCGCTCTCTCACAGGCAGTTCTCAACCTCC-TAAGAGCTCTTGGGTTTCCAGTAA 124263 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 || | || || |||||||| |||| ||| | | || | | || |||| Sbjct 124262 TGTCCTTCTTGCTCTTCCTCTTGAACTCTTGAACGAAGTGGTTAACCATTCTGTTGTCAA 124203 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 |||||||||| || | | ||| | ||| | || || | || | ||| | || |||| Sbjct 124202 AATCTTCACCACCAAGATGAGTGTCTCCAGCGGTTGCCTTAACCTCGAAGATACCTTCTT 124143 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | | ||||| |||||| || ||||| || | |||||| || | || ||| Sbjct 124142 CAATGGTAAGAAGAGAGACATCAAAAGTACCACCTCCAAGATCAAAGATCAACACGTTCT 124083 Query 518151 TTTCT------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | ||| || | || || |||||||| || |||| ||||||||| || || | Sbjct 124082 TCTCTCCAACGCTGGTTGCCTTCTTGTCAAGACCGTAGGCAATAGCAGCAGCTGTCGGCT 124023 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 |||| || ||||||| ||| || | ||||||||| ||| ||||| || |||||||| | Sbjct 124022 CATTGATGATTCTCATAACGTTTAAACCAGCAATAACTCCAGCATCCTTTGTGGCTTGAC 123963 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || || || || || || |||||||| || | |||||| Sbjct 123962 GCTGAGAGTCATTGAAGTAAGCAGGAACGGTGACAACGGC 123923 >seq1502 Length=857606 Score = 224 bits (248), Expect = 7e-53 Identities = 700/1065 (66%), Gaps = 24/1065 (2%) Strand=Plus/Plus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 |||| | |||||| || ||||||||||| || | || || ||| |||||| || | Sbjct 103301 CGGCCGACACATTCAGGATACCATTGGCGTCAATGTCGAAACAGACAGTAATTTGCGGAA 103360 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | |||| |||||||||| || || | | ||| |||||| | || || || | Sbjct 103361 CACCTCGTGGAGCAGGTGGTATACCGCTGAGCTCGAATTTTCCCAAAAGGTTGTTGTCCT 103420 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAA 517435 | || | || || || ||| | | ||||| |||| | | | || || |||||| Sbjct 103421 TTGTCCTTGCTCTCTCCCCTTCGTAGACCTGGATCAGTA-CACCGGGCTGGTTGTCTGAA 103479 Query 517436 TAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATT 517494 || || | |||| |||| ||| | | |||||||||||||| || ||| | Sbjct 103480 TAGGTAGAGAATA-TCTGCTCTTTCTTCGTCGGAATTGTTGTGTTCCTCGGAATCAGGAC 103538 Query 517495 GGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 517554 ||||||| ||||| || ||||| ||||| | ||||||||||| ||||||| || | Sbjct 103539 AGTCATAACCCCACCGGCGGTTTCCAAACCCAAGGAAAGAGGAGTCACATCAAGAAGTAA 103598 Query 517555 AATATTTTGAAGTTTTTCATCAGTTTGACC-AACAAGAATAGCTGCTTGAATAGCAGCAC 517613 | | ||| | || || | || ||| |||| || || ||||||| ||| || | Sbjct 103599 CAAGTCTTGGACCTTCTCGTTCCCTTCACCGCTCAAG-ATTGCAGCTTGAACAGCTGCTC 103657 Query 517614 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 | || |||||||| || || || |||| ||| | || | ||| |||||||| || | Sbjct 103658 CGTAGGCAACAGCCTCGTCCGGGTTAATGCTTTTACAGAGCTCTTTCCCATTGAAGAAGT 103717 Query 517674 -TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 ||| || ||| || || ||||| || | | || || ||||| | |||| ||| Sbjct 103718 CTTGCAA-AAGCTGCTGCACTTTAGGGATCCTTGTAGAGCCACCAACAAGGACAACATCA 103776 Query 517733 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791 || || |||| || |||| || | ||| ||| || || || ||||| | || Sbjct 103777 TGGACGCTGT-TCTTGTCCATCTTAGCATCTCTCAAACACTTCTCCACTGGTTCCATACA 103835 Query 517792 CGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 517851 | |||||||| || || || |||||| |||| | ||| | || | | Sbjct 103836 CTTCCTAAACAAATCCATGTTGAGCTCCTCGAATCTAGCACGAGTGATGGTTGTGTAGAA 103895 Query 517852 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 517911 |||||| || ||| | | ||| || | |||||| || || |||| | ||||| || | Sbjct 103896 ATCAATACCCTCGTAGAGAGAGTCGATTTCAATAGTTGTCTGAGCAGTCGAAGAAAGGGT 103955 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTC 517969 | || || || ||||| |||||||| || || | || ||| ||| | || | | Sbjct 103956 TCTCTTCGCCCGCTCACAAGCTGTCCTAAGCCTCCTCAAAGCTCTTG--GGTTACCAGTG 104013 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTAT 518027 | ||| | || | || ||||| || || | |||| | ||| | || | | || | Sbjct 104014 ATATCCTTCTTGTTCTTCCTCTTAAACTCCTGAACAAA--ATGATTAACCATTCTGTTGT 104071 Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087 ||||||| ||||| || | | || | || | ||| | | || | || | || | Sbjct 104072 CAAAATCCTCACCGCCAAGATGCGTGTCACCAGCCGTGGACTTCACCTCAAAGATACCTT 104131 Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147 | |||| | | | || |||||| || ||||| |||| |||||| ||||| |||| Sbjct 104132 CCTCAATCGTAAGCAAAGACACATCAAAAGTACCACCTCCCAAATCAAAGATAAGAACAT 104191 Query 518148 TCATTT--CTTTGTCTTG----GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 || | | | || | ||||| ||||||||||| |||| ||||||||||||| Sbjct 104192 TCTTCTCGCCAACACTCGACGCCTTTTTGTCAAGACCATAAGCAATTGCAGCAGCAGTTG 104251 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 | ||||| || || | || ||||| ||||||| || ||| ||||| || || || | Sbjct 104252 GCTCATTGATGATACGCATCACATTGAGACCAGAGATAACTCCAGCATCCTTTGTCGCCT 104311 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | | || ||||| || ||||| ||||| || |||| || |||| Sbjct 104312 GACGCTGAGAATCATTGAAATAAGCAGGTACGGTAACCACAGCAT 104356 >seq139 Length=5440 Score = 197 bits (218), Expect = 1e-44 Identities = 945/1485 (64%), Gaps = 33/1485 (2%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 |||||| | || | |||||| | || ||||| ||||| | ||||| || | || Sbjct 2025 TTTATCCTCCGCCGACACATTTAAGATCCCATTTGCATCGATGTCAAAGCAAACATTGAT 2084 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 |||||| || || | | ||||| || || || | | | || ||||| ||| || Sbjct 2085 TTGAGGAACTCCACGTGGGGCAGGAGGAATGCCCTTGAGCTCGAAGGTTCCAAGAAGGTT 2144 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || ||||| || ||||| || || | | |||||| ||| | | ||||| Sbjct 2145 GTTGTCTTTGGTCCTCGCACGTTCTCCTTCATAGACTTGGATCAGAACGCCTGGCTGATT 2204 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 517488 || | ||| || | || ||| || |||||||||| || || ||||| || Sbjct 2205 GTCCGCATACGTGGAGAACACTTGCTCCTTCTTACAAGGAACCGTCGTATTTCTCGGGAT 2264 Query 517489 AATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 517548 | ||||| | ||||| ||||| || | |||||| || || || ||||||| Sbjct 2265 TAACACAGTCATCACCCCACCGGCTGTCTCAATTCCAAGACTTAGCGGCGTAACATCAAG 2324 Query 517549 TAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 517608 || | | | ||| | || ||| || |||| ||| || || || |||| || Sbjct 2325 AAGCAAGAGGTCTTGGACCTTGTCACTTCCTTCACCAGTAAGGATCGCAGCCTGAACCGC 2384 Query 517609 AGCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTG 517666 ||| ||||||||||| ||||||||||| || | | || ||| || | || || ||| Sbjct 2385 AGCTCCATATGCAACGGCTTCATCAGGGTTTATGCTCTTGCAT--AGCTCCTTCCCGTTG 2442 Query 517667 AAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 517725 || |||| ||| || ||| || | || ||||| | | |||||||| || | || Sbjct 2443 AAGAAATCTTGTAA-AAGCTGCTGAATTTTCGGAATCCTCGTCGATCCTCCGACCAGAAC 2501 Query 517726 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC 517785 | || |||||| | | || || || || | || | |||||| || || || || Sbjct 2502 CACCTCGTGCACCCGGGCCTTGTCGAGCTTCGCGTCTTTAAGAACTTTCTCTACAGGATC 2561 Query 517786 AAGACCCGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGA--G 517841 | || || ||||| || || || || || || | || | || ||| | Sbjct 2562 CATACATTTCCTGAACAAATCCATGTTCATC--TCCTCAAACCTCGCAC--GTGAGATCG 2617 Query 517842 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 517901 | ||| | ||||| || || ||| ||||||| ||||| || || |||| | | Sbjct 2618 TCGCATAGAAGTCAATACCCTCATGCAACGAATCAATCTCAATAGTCGTCTGAGCTGTGG 2677 Query 517902 AAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTG 517961 | || || | | || || | ||||| || ||||| | || || | || | || Sbjct 2678 ATGAAAGCGTTCTCTTTGCTCTCTCACAAGCCGTCCTCAACCTCCGAAGTGCCCTCGC-- 2735 Query 517962 ATTGATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACA 518017 ||| | ||| | || | | ||| ||||| || || |||| | ||| | ||| Sbjct 2736 ATTCCCACCAATATCCTTCTTGTGTTTCCTCTTAAACTCCGCAACGAA--ATGGTTCACA 2793 Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077 || | || ||||| |||||||| || | | ||||| ||| | || ||| | |||| Sbjct 2794 AGTCTGTTGTCAAAGTCTTCACCACCAAGATGAGTATCTCCGGCAGTGGCTTTCACTTCA 2853 Query 518078 AAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAA 518137 |||| || ||||||| | ||| || | |||||| ||||||||||| | ||| ||| Sbjct 2854 AAAACACCTTCTTCAATCGTCAACAGCGAAACATCAAACGTTCCACCACCGAGATCGAAA 2913 Query 518138 ATAAGTACATTCATTTCTTTG-TCTTGGT-----TTTTATCAAGACCATACGCAAAAGCA 518191 || | | ||| | || | |||| || | || || ||||| || || | ||| Sbjct 2914 ATCAAAATGTTCCTCTCACCGGTCTTCGTGCCCTTCTTGTCCAGACCGTAAGCTATAGCT 2973 Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251 |||||||| || ||||| || || | ||||||||| || |||| ||| ||| || || Sbjct 2974 GCAGCAGTCGGCTCATTGATGATCCGCAAAACATTGAGCCCAGAAATAGCTCCAGCGTCC 3033 Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311 || || || ||||| || ||||||||||| || || || || |||| ||||| | | Sbjct 3034 TTCGTAGCCTGTCTCTGAGAATCGTTAAAGTACGCCGGGACCGTAACGACGGCGTTTTTA 3093 Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAA 518371 || | ||||| ||| || || |||| || || | ||| || || Sbjct 3094 ACAGTGTGACCAAGGAAAGACTCAGCGACTTCCCTCATCTTCACCAACACCATGGAAGAT 3153 Query 518372 ATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTA 518431 || | || || || || |||| ||| || | || || || | | || ||| Sbjct 3154 ATCTCCTCAGGAGAGAATCGCTTCTCTTCGTTCTTGTACGAGACGACTATCATCGGCTTA 3213 Query 518432 TTACC---AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG 518488 | || | | || |||||| || ||||||| | |||||| || ||| | Sbjct 3214 TCTCCGGGACCTGAAACAACTTTGAACGGCCAGTGTCGCATATCACTCTGTACAGAAGGA 3273 Query 518489 TCATTAAAATCT-CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAAT 518547 ||| | ||||| || || || | ||||| ||||| || | ||| || || || | Sbjct 3274 TCA-GAGAATCTCCTTCCGATAAGACGTTTCGCATCGAAGACAGTGTTCTGAGGGTTCAA 3332 Query 518548 TGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATA 518607 || |||||| || || || ||||| |||| | || || || || || | || || Sbjct 3333 CGCCACTTGATTCTTCGCCGCGTCTCCGATCATTCGCTCGGTGTCAGTGAAGGCGACGTA 3392 Query 518608 TGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCA 518667 ||||| || || || || || ||||| || | ||| || || || | | || ||| Sbjct 3393 CGATGGTGTCGTACGGTTTCCCTGATCGTTAGGAATGATCTCCACACGATCGTTCATCCA 3452 Query 518668 TACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 || || |||||||| | || || || | ||| || |||||||| Sbjct 3453 AACTCCAACACAACTGTATGTAGTGCCGAGATCGATGCCAATAGC 3497 >seq861 Length=1651656 Score = 192 bits (212), Expect = 4e-43 Identities = 742/1155 (64%), Gaps = 18/1155 (2%) Strand=Plus/Minus Query 517162 AGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAAT 517221 ||||||| || |||||||||||| | || | || |||||||| | || || || Sbjct 577472 AGCTTCTTGAACCATTCTCTCAATCTCGTCCTTTGACAATCTTCCTTTGTCGTTGGTGAT 577413 Query 517222 AGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATT 517281 || || || || || |||| || || | || | || || || ||||| || Sbjct 577412 TGTGATCTTGTTCTTTTGCCCCGTTGTCTTGTCCTCAGCTGAGACGTTGAGGATACCGTT 577353 Query 517282 GGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCC 517341 ||||| | || || ||| |||||||| || ||||| |||| || ||||| || Sbjct 577352 CGCATCAATGTCGAAACAGACAGTGATTTGAGGAACACCTCTTGGAGCTGGAGGGATACC 577293 Query 517342 TTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAA 517401 | | ||| | |||| | || || ||||| || | || || || || | Sbjct 577292 GGAAAGCTCGAATTTACCCAAAAGGTTGTTGTCTTTGGTTCTTGCTCTCTCGCCTTCATA 577233 Query 517402 AATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTT 517461 | |||||| || | | ||| || ||||||||||||| || ||| || || Sbjct 577232 GACTTGGATCAAGACACCGGGTTGGTTGTCTGAATAAGTTGAGAAGACTTGTTCCTTCTT 577173 Query 517462 ACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAA 517521 || || ||||| ||||| | || | ||||| | || || || ||||| | Sbjct 577172 TGTGGGGATGGTTGTATTTCTCTGGATCAAGACAGTCATGACTCCTCCAGCGGTTTCAAG 577113 Query 517522 ACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTG 517581 ||| |||||||| || |||||||| | | || | || ||||| || || | | | Sbjct 577112 ACCGAGAGAAAGTGGTGTGACATCGAGCAAGAGGAGATCTTGAACCTTCTCGTTACCCTC 577053 Query 517582 ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAAC 517641 ||| ||||||||||| || | ||| ||||| ||||||||||| ||||| || || | Sbjct 577052 ACCGCTGAGAATAGCTGCCTGGACAGCTGCACCGTATGCAACAGCCTCATCGGGGTTGAT 576993 Query 517642 AGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAAT 517701 | || |||| || |||||||| || | | || | |||| ||||| || || Sbjct 576992 GGATTTGCAAAGTTCCTTGCCATTGAAGAAGTCTAGGAGCAATTGTTGGACCTTGGGGAT 576933 Query 517702 ACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAAT 517760 ||| | ||| || ||||| | |||| |||| | ||| | | || |||| || | || Sbjct 576932 ACGGGTTGAGCCACCAACAAGGACAACATCAT-CGACTGAGTTCTTGTCCATCTTAGCAT 576874 Query 517761 CCAATAAAAC-TTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCT 517819 || || || || ||||| || || | || | ||| || | || ||| || Sbjct 576873 -CACGAAGACACTTCTCAACAGGCTCCATACACTTTCTGAAAAGATCCATGTTAAGCTCC 576815 Query 517820 TCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAAC 517878 |||||| | || | || | | || | || || |||| || ||| | | ||| || | Sbjct 576814 TCGAATCTGGCACGGGTGATTG-GAGAGTAGAAGTCAACACCCTCGTATAGAGAGTCGAT 576756 Query 517879 TTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCT 517938 ||| || ||||| |||| || ||| || || | | || || | ||||| || || || Sbjct 576755 TTCGATGGTAGTCTGAGCCGTAGAGGAGAGAGTCCTCTTCGCTCTCTCACAGGCAGTTCT 576696 Query 517939 TAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGTTTTATATTTTCTCTTGAAA 517996 | || | || ||| | | | || | | || | || | ||||||||||| Sbjct 576695 CAACCTCCTTAGAGCTCT--CGGGTTCCCGCTGATGTCCTTCTTGTTCTTTCTCTTGAAC 576638 Query 517997 TCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTT 518056 |||| ||| | | || | | || || ||||| ||||| || | | ||| | | Sbjct 576637 TCTTGGACAAAGTGGTTCACCATTCTGTTGTCGAAATCCTCACCACCAAGATGAGTGTCT 576578 Query 518057 CCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGG 518116 || | || || | |||| || | || ||||||| | | ||||| |||||| Sbjct 576577 CCAGCAGTCGCCTTCACTTCAAAGATACCTTCTTCAATGGTGAGAAGAGAGACATCAAAT 576518 Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTC-------TTTGTCTTGGTTTTT 518169 || |||||||| | ||||| || | |||||| | || ||||| || || Sbjct 576517 GTACCACCACCAAGGTCAAAGATCAAAACATTCTTCTCCCCAACACTTGTC-GCCTTCTT 576459 Query 518170 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 518229 || |||||||| |||| |||||| ||||| || ||||| || || | || |||||| | Sbjct 576458 GTCTAGACCATAAGCAATAGCAGCTGCAGTAGGCTCATTGATGATACGCATAACATTCAA 576399 Query 518230 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 518289 ||||||||| || ||||| || || || || | || || || || || || || || Sbjct 576398 ACCAGCAATGACACCAGCATCCTTCGTTGCCTGACGCTGAGAGTCATTGAAGTAAGCTGG 576339 Query 518290 AACAGTAATAACGGC 518304 |||||| | ||| || Sbjct 576338 AACAGTTACAACAGC 576324 >seq234 Length=2418110 Score = 120 bits (132), Expect = 2e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||||||||| || |||||||| || |||||| ||||| ||||||||| Sbjct 146783 CCATAGGATAGAGCAGCAGCCGTAGGTTCATTTATGATTCTCTCAACATCGAGACCAGCA 146842 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||||| || |||||||| || ||||| || || | ||| ||||| || || |||||||| Sbjct 146843 ATTCTCCCGGCATCTTTTGTTGCTTGCCTCTGAGCATCATTAAAGTAAGCTGGAACAGTG 146902 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 | ||| || | | ||| ||| |||| ||||| ||| || | |||||| || Sbjct 146903 ACAACAGCCTTCTTGACTGATTTTCCAAGGTAAGCTTCTGCTGTCTCTTTCATCTT 146958 >seq1098 Length=1074956 Score = 107 bits (118), Expect = 1e-17 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235 |||||| | | |||||||| || ||||| || || || ||| |||| ||||||||| Sbjct 988112 ACCATATGATAGTGCAGCAGCTGTAGGTTCGTTGATGATCCTCTGGACATCAAGACCAGC 988053 Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 |||| | || ||||| || ||||||||||| |||| ||| || ||||| || |||||||| Sbjct 988052 AATTTTCCCAGCATCCTTTGTGGCTTGTCTCTGTGCATCATTGAAATAAGCTGGAACAGT 987993 Query 518296 AATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 || ||| || | || | ||| || | ||||| || |||| |||||||| Sbjct 987992 AACAACAGCTTTGGTGATAGATTTCCCGAGGTAAGCTTCAGCTGTTTCCTTCATTTT 987936 Score = 93.3 bits (102), Expect = 3e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 322243 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 322302 ||| |||| || || || || || ||||| || || || | | ||||| | ||| || Sbjct 988112 ACCATATGATAGTGCAGCAGCTGTAGGTTCGTTGATGATCCTCTGGACATCAAGACCAGC 988053 Query 322303 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 322362 |||||| ||| ||| || |||||||||||||| ||||| ||||| ||||| ||||| Sbjct 988052 AATTTTCCCAGCATCCTTTGTGGCTTGTCTCTGTGCATCATTGAAATAAGCTGGAACAGT 987993 Query 322363 AATAACTGCTTTATTAATAGGTTT 322386 || ||| ||||| | |||| ||| Sbjct 987992 AACAACAGCTTTGGTGATAGATTT 987969 >seq1810 Length=8348134 Score = 105 bits (116), Expect = 5e-17 Identities = 150/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||| |||||||| | |||||| | || | | |||| ||| ||| ||| Sbjct 1313621 ACATCAAAGGTACCACCACCAAGATCAAAGACTAGGA---TTGTTTCATTG-CTT--TTT 1313568 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 | |||| ||||| || || | |||||| || || ||||| ||||| | | ||| | Sbjct 1313567 CTGTCAAACCCATAAGCCAATGAAGCAGCTGTGGGCTCATTGATAATACGAAGAACTTCC 1313508 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | |||||||||| || |||||||| || ||| || ||||||||||| || || ||| Sbjct 1313507 AACCCAGCAATTCGACCAGCATCTTTTGTAGCTGTCCTCTGTGAATCGTTGAAGTAAGCA 1313448 Query 518288 GGAACAGTAATAACGGCATCAGTTACTT 518315 || ||||| || || || | ||||||| Sbjct 1313447 GGCACAGTGATGACAGCCTTGGTTACTT 1313420 >seq410 Length=3326409 Score = 105 bits (116), Expect = 5e-17 Identities = 150/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 ||||| ||| |||||||| | |||||| | ||| | | | ||| ||| ||| ||| Sbjct 1553130 ACATCGAAGGTACCACCACCAAGATCAAAGACAAGAATAGT---TTCATTG-CTT--TTT 1553077 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 | |||| ||||| || || | ||||||||| || ||||| || || | | ||| | Sbjct 1553076 CTCTCAAACCCATAAGCCAAGGAAGCAGCAGTAGGCTCATTGATGATACGAAGAACTTCT 1553017 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | |||||||| | || |||||||| || ||| ||||||||||| || || || ||| Sbjct 1553016 AATCCAGCAATACGGCCAGCATCTTTTGTAGCTGTCCTTTGTGAATCATTGAAGTAAGCA 1552957 Query 518288 GGAACAGTAATAACGGCATCAGTTACTT 518315 || ||||| || || || | |||||||| Sbjct 1552956 GGCACAGTGATGACTGCTTTAGTTACTT 1552929 >seq1340 Length=1566820 Score = 87.8 bits (96), Expect = 1e-11 Identities = 142/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||||| |||| | ||| | | | |||||| ||| |||||||| | ||||| | || Sbjct 236235 TCCATTATCAATGGTCAAGACACTGACATCAAAGGTACCACCACCAAGGTCAAAGACGAG 236294 Query 518143 TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 | ||| | || | | | |||||||||||||| |||| ||||||||| || || Sbjct 236295 GATGTTCTTCTCACCACCCT---TCTTATCAAGACCATAGGCAATAGCAGCAGCGGTGGG 236351 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 ||| || || ||||| |||||| || ||||| || || ||||| || ||||| || Sbjct 236352 TTCGTTGATGATTCTAGCAACATTGAGCCCAGCGATAACACCAGCATCCTTTGTGGCCTG 236411 Query 518263 TCTTTGTGAATCGTTAAAATATGC 518286 || || | ||| || || || || Sbjct 236412 CCTCTGGGCATCATTGAAGTAAGC 236435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780725932316464