Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1028 125 9e-24 seq1470 114 2e-20 seq1639 113 6e-20 seq1071 111 2e-19 seq1188 102 1e-16 >seq1028 Length=1373109 Score = 125 bits (138), Expect = 9e-24 Identities = 286/420 (68%), Gaps = 18/420 (4%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCA 15974 |||||| ||||| | | ||| ||||| || | || | || ||| |||| | || || Sbjct 777705 ATCAAGAATATCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTT--CA 777762 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 |||||||||||||| || | ||||| || | || ||||| | |||||| || || Sbjct 777763 AAACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCGTTACCT--- 777819 Query 16035 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 |||| |||| | | |||| | || || ||||| || ||||||| ||||| ||| Sbjct 777820 CCACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCAACAAAGACAATG 777879 Query 16092 CATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 || || || || || ||| ||| ||||| || || | ||| || ||||| Sbjct 777880 CAAGGAGCGTTCTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTTGAGGCACCAACACC 777938 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 ||||||||||| ||||| | | | | | || | || ||| || ||| || ||||| Sbjct 777939 GACAAACATCTCAACAAACTCAGAACCTG-AGATGGAGAAGAAAGGCACACCAGCTTCAC 777997 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | ||||||||| || | ||| || || || ||||| || ||| ||||| ||| Sbjct 777998 CAGCAATGGCTTTTGCTAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACAC 778057 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 || || |||||||| ||| || ||| ||||||| |||| ||| ||||| ||||| Sbjct 778058 CTTTCGGGATCTTGGCACCA--ACCGCAGTAAATCTCTCGGGTTTCTTCAGAAACTCCAC 778115 >seq1470 Length=2917085 Score = 114 bits (126), Expect = 2e-20 Identities = 199/281 (71%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCA-TTCGCTG 16032 ||| ||||||||||| ||||||||||| ||||| || ||||| | |||||| ||| Sbjct 2793284 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCACC 2793343 Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 || | | ||||| | | ||| | |||||||||||||||||||| || || || || | Sbjct 2793344 GCCCATC-CCAGCTCCTCTCTGCCTACCCACGGCATCAATCTCATCGATAAACACAATAC 2793402 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 16148 | ||| ||||| || || ||||| | ||||| || || || | || |||||| Sbjct 2793403 AAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGACGCACCCACA 2793458 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 |||||||| | ||| ||||| | | || | |||| | ||| || || || ||| Sbjct 2793459 CCAACAAAAAGCTCAACAAACTCAGACGCAGCACATGAAAAGAACGGCACTCCAGCTTCT 2793518 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | ||| ||||| |||||||| || Sbjct 2793519 CCAGCTACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 2793559 >seq1639 Length=5101707 Score = 113 bits (124), Expect = 6e-20 Identities = 390/599 (65%), Gaps = 12/599 (2%) Strand=Plus/Minus Query 101721 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 101780 || || || ||| | || || | | ||||||| | ||||||| | | || ||| | Sbjct 2280364 GAGCCACTTCTAACACCAACCCCAGACAGATTCTGTATGTTCCCAATCCACTACCCAGAG 2280305 Query 101781 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT-TGGACTGCTGAAGAGGTAGATCT 101839 ||||||| | || ||||| || | || | | ||||| |||||||| |||||||| Sbjct 2280304 ATCTGGGAGATGTACAAGAAAGC-CGAAGCATCGTTCTGGACCGCTGAAGAAGTAGATCT 2280246 Query 101840 CTCAAAGGATTTGGACGATTGGAAGAC---TCTAAATGAAAATGAAAAGAAATTCATAAA 101896 ||| | || ||||||| ||| ||| || || |||| | ||||| || Sbjct 2280245 ATCACAAGACAATCGCGATTGGGAGAACAATCTCAACGACGGTGAACGTCACTTCATCAA 2280186 Query 101897 ATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAA 101956 | || |||| || ||||| || | || || ||||| || || |||||| || | | Sbjct 2280185 ACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTGTTAGAGAATCTCGCTT-CTC 2280127 Query 101957 CTTTGCTGAT-GAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGTCATA 102015 || || || || ||| ||| || ||| | ||||||||| || || | || Sbjct 2280126 GATTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGCTTTCTATG-GTTTCCAGATCGCG 2280068 Query 102016 AT-GAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGT 102074 || |||| | || |||| || ||| || | || | |||||| || ||| Sbjct 2280067 ATTGAAAACATTCACTCCGAGATGTATAGTCTCCTTCTCGATACGTATATCAAAGATAAC 2280008 Query 102075 GCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCG 102134 |||| | || || ||| || || |||| |||| || | |||||||| Sbjct 2280007 AAAGAGAGAGATCATCTATTTCGCGCGATTGAAACGATTCCTTGCGTCGCGAAGAAAGCT 2279948 Query 102135 GATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCA 102194 | ||||| ||||| ||| | || | || | |||| ||||| ||| | | || Sbjct 2279947 CAGTGGGCGATGAAATGGATCGACGGA---TCTCAAACCTTCGCTGAACGAATTGTAGCT 2279891 Query 102195 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 102254 || || |||||||| || |||||||||||||| ||| ||| | || | ||||| ||| Sbjct 2279890 TTCGCTTGTGTTGAAGGCATCTTCTTCTCTGGAAGCTTTTGCTCCATCTTCTGGCTTAAG 2279831 Query 102255 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 || |||||||||||||| || | ||||| ||||| | ||||| || ||||| || Sbjct 2279830 AAACGAGGTCTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCACGAGACGAAGG 2279772 >seq1071 Length=2817113 Score = 111 bits (122), Expect = 2e-19 Identities = 300/452 (66%), Gaps = 18/452 (4%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | ||| || || || || | | || ||||| Sbjct 1432751 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCGAGAATGTCTGCTCTGTTGGTTGCA 1432692 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | || | || ||| || |||| ||||||||||||||||| |||| ||||| Sbjct 1432691 GCAACTACGATAACACCAGT---GTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGA 1432635 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| || ||||| | ||||||||| || |||| || | | | |||| | Sbjct 1432634 TTAAGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTA 1432578 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||| | || || ||||| || |||||| || || Sbjct 1432577 CCAACAGCATCTATTTCATCCACAAAAACAATGCACGGAGCATTTTCTTTTGCTTTTTTG 1432518 Query 16119 AAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 || ||||| || || |||| || || ||||| ||||||||||| ||||| | | Sbjct 1432517 AAAAGATCGCG--GACCCTTGATGCACCAACACCGACAAACATCTCAACAAACTCAGAAC 1432460 Query 16177 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 | | | || | | |||||| ||| || |||||| ||||||||| || | || || Sbjct 1432459 CCG-AGATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTT 1432401 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295 || || ||||| || ||| | ||||| ||||| || ||| ||| ||| || Sbjct 1432400 TTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACCGCA 1432341 Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | | |||||||| | ||| ||||| ||||| Sbjct 1432340 GTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 1432309 >seq1188 Length=2619186 Score = 102 bits (112), Expect = 1e-16 Identities = 197/283 (70%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||||||||| | ||| ||||| || ||||| | |||||||| || Sbjct 851198 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 851141 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| || || Sbjct 851140 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 851081 Query 16092 CATGGTTGATTTTCG--CGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || | ||||| ||| || || | ||||| || || || | || || || Sbjct 851080 CAAGG--GGCTTTCGACTTAGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCGAC 851025 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||| || || | ||||||||| | | ||| | || || |||||| || || ||| Sbjct 851024 ACCGACGAAAAGCTCCACAAACTCCGAGGCCGCGCAAGAGAAGAAGGGTACTCCAGCTTC 850965 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 || || | || | || | || |||||||||||||| ||| Sbjct 850964 CCCAGCCACCGCCCTAGCCAAGAGTGTCTTACCCGTACCAGGC 850922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620727315959680