Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1639 111 2e-19 seq1071 98.7 1e-15 seq1470 82.4 9e-11 >seq1639 Length=5101707 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 119553 CCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAG 119612 ||||||||||| |||| |||||| ||||| ||||||| ||||| |||||||| |||||| Sbjct 2279811 CCAGGCATGAGACCTCGTTTCTTAAGCCAGAAGATGGAGCAAAAGCTTCCAGAGAAGAAG 2279870 Query 119613 ATGCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAAC 119672 ||||| || ||||| |||||||| | | || ||||| || | | |||| ||||| | Sbjct 2279871 ATGCCTTCAACACAAGCGAAAGCTACAATTCGTTCAGCGAAGGTTTGAGATCCGTCGATC 2279930 Query 119673 CACTTGAGAGCCCA 119686 || || | ||||| Sbjct 2279931 CATTTCATCGCCCA 2279944 >seq1071 Length=2817113 Score = 98.7 bits (108), Expect = 1e-15 Identities = 298/455 (65%), Gaps = 24/455 (5%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| | || | ||| || ||||| || | | ||| || || Sbjct 1432751 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCGAGAATGTCTGCTCTGTTGGTTGCA 1432692 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || ||||| ||||| || || || ||||| || Sbjct 1432691 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 1432632 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAA--CGCTT--CTTA 11676 | |||||||| | ||||| || | | ||||| | ||| | ||| | || Sbjct 1432631 AGGGTCTGTTCTCTTTCATCATTA-----CCT-CCACCAATTCCGGTTCCTCTTTGCCTA 1432578 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 || ||||| || || ||||| | || || || ||||| || | ||| | || | Sbjct 1432577 CCAACAGCATCTATTTCATCCACAAAAACAATGCACGGAGCATTTTCTTTTGCTTTTTTG 1432518 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 ||||| || || || | || |||||||| || ||||||||||| || | || Sbjct 1432517 AAAAGATCGCGGACCCTTGATGCACCAACACCGACAAACATCTCAACAAACT------CA 1432464 Query 11797 GAACAC----TG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 |||| | || || |||||| ||| || |||||||| |||||| || | || Sbjct 1432463 GAACCCGAGATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGG 1432404 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTT 11910 || || || |||||||| | |||| | || || | || ||||||| ||||||| Sbjct 1432403 GTTTTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACC 1432344 Query 11911 CCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 || | | | |||||||||||| || || ||||| Sbjct 1432343 GCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 1432309 >seq1470 Length=2917085 Score = 82.4 bits (90), Expect = 9e-11 Identities = 190/285 (67%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTT---GGAG 11649 || || ||||| || || | |||||| || ||||||||||| | |||||| || | Sbjct 2793285 AATCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCACCG 2793344 Query 11650 GGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATA 11709 ||| ||| || | | || | |||| || || |||||||||||||| || || ||| Sbjct 2793345 CCCATCCCAGCTCC---TCTCTGCCTACCCACGGCATCAATCTCATCGATAAACACAATA 2793401 Query 11710 CACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 || ||| || | |||| || || | || | || | ||| || ||||| Sbjct 2793402 CAAGGTGCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCCACACCA 2793461 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCA 11829 || || | |||||| || | | |||| ||| || ||| || || || || ||| Sbjct 2793462 ACAAAAAGCTCAACAAACTCAGACGCAGCACATGAAAAGAACGGCACTCCAGCTTCTCCA 2793521 Query 11830 GCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCA 11874 || | |||| ||| | || ||||| |||||||| |||| |||| Sbjct 2793522 GCTACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGTGGACCA 2793566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588961687883200