Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1028 132 6e-26 seq1071 120 4e-22 seq1470 116 4e-21 seq1188 109 6e-19 seq1639 91.5 2e-13 >seq1028 Length=1373109 Score = 132 bits (146), Expect = 6e-26 Identities = 283/417 (68%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| ||||| | | ||| || || || | || | || ||| || | | ||||| Sbjct 777705 ATCAAGAATATCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 777764 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||||||| || | || || || | || ||||| | |||||| || || Sbjct 777765 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCGTTACCTCC--- 777821 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| | | |||| | || || ||||| || ||||||| |||||||| || Sbjct 777822 ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCAACAAAGACAATGCA 777881 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || || || ||| | | || |||||||| || ||| ||| || ||||| || Sbjct 777882 AGGAGCGTTCTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGAC 777941 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | || | || ||| || ||| || |||||| | Sbjct 777942 AAACATCTCAACAAACTCAGAACCTG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAG 778000 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 |||||||| || | ||| || || || ||||| || ||| ||||| |||| Sbjct 778001 CAATGGCTTTTGCTAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACCTT 778060 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 || |||||||| ||| || ||| ||||||| |||| ||| ||||| ||||| Sbjct 778061 TCGGGATCTTGGCACCA--ACCGCAGTAAATCTCTCGGGTTTCTTCAGAAACTCCAC 778115 >seq1071 Length=2817113 Score = 120 bits (132), Expect = 4e-22 Identities = 245/360 (68%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 ||||||||||||||||| |||| || || |||| || ||||| | ||||||||| || Sbjct 1432664 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 1432605 Query 9339 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 |||| || | | | |||| | || || ||||| || ||||| | || ||| Sbjct 1432604 CC---ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACAAAAACA 1432548 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || || || |||||| || ||| || |||||||| |||||| || || ||| Sbjct 1432547 ATGCACGGAGCATTTTCTTTTGCTTTTTTGAAAAGATCGCGGACCCTTGATGCACCAACA 1432488 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9514 || ||||||||||| ||||| | | | | | || | | |||||| ||| || ||| Sbjct 1432487 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGTACACCAGCTTC 1432429 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 ||| ||||||||| || | || || || || ||||| || ||| | ||||| | Sbjct 1432428 ACCAGCAATGGCTTTTGCCAACAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAAC 1432369 Query 9575 ACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 ||| || ||| ||| ||| || | | |||||||| | ||| ||||| ||||| Sbjct 1432368 ACCTTTGGGGATCCGGGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 1432309 >seq1470 Length=2917085 Score = 116 bits (128), Expect = 4e-21 Identities = 196/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCA-TTCGCTG 9339 ||| ||||||||||| |||||||| || ||||| || ||||| | |||||| ||| Sbjct 2793284 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCACC 2793343 Query 9340 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 || | | ||||| | | ||| | |||||||||||||||||||| || || ||||||| Sbjct 2793344 GCCCATC-CCAGCTCCTCTCTGCCTACCCACGGCATCAATCTCATCGATAAACACAATAC 2793402 Query 9400 ATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 | ||| ||||| || | ||||| | ||| | ||| || || |||||||| Sbjct 2793403 AAGGT--GCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCCACACC 2793460 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 |||||| | ||| ||||| | | || | |||| | ||| || || || ||| || Sbjct 2793461 AACAAAAAGCTCAACAAACTCAGACGCAGCACATGAAAAGAACGGCACTCCAGCTTCTCC 2793520 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || | |||| || | ||| ||||| |||||||| || Sbjct 2793521 AGCTACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 2793559 >seq1188 Length=2619186 Score = 109 bits (120), Expect = 6e-19 Identities = 195/281 (69%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||||||||| | || ||||| || ||||| | |||||||| || Sbjct 851198 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 851141 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| |||||| Sbjct 851140 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 851081 Query 9399 CATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || || | ||||| || | || || | ||| | ||| || || || |||| Sbjct 851080 CAAGG--GGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCGACAC 851023 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 | || || | ||||||||| | | ||| | || || |||||| || || ||| | Sbjct 851022 CGACGAAAAGCTCCACAAACTCCGAGGCCGCGCAAGAGAAGAAGGGTACTCCAGCTTCCC 850963 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557 | || | || | || | || |||||||||||||| ||| Sbjct 850962 CAGCCACCGCCCTAGCCAAGAGTGTCTTACCCGTACCAGGC 850922 >seq1639 Length=5101707 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || ||||| || || | ||| |||||||| || || ||||||||||| || ||| Sbjct 2279772 CCTTCGTCTCGTGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGACCTCGTTTC 2279831 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | ||| || || ||||||||||| || || ||||| || || Sbjct 2279832 TTAAGCCAGAAGATGGAGCAAAAGCTTCCAGAGAAGAAGATGCCTTCAACACAAGCGAAA 2279891 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || | || || || ||||||| |||| | ||| | ||||||||| ||||| | Sbjct 2279892 GCTACAATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 2279948 Query 117472 GCCTTCTTC 117480 || |||||| Sbjct 2279949 GCTTTCTTC 2279957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589966463466560