Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3 113 6e-20 seq178 95.1 1e-14 >seq3 Length=3374423 Score = 113 bits (124), Expect = 6e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| || || || || ||||| || | ||| || || || |||||||| ||| | | Sbjct 1010028 TTCTTGATGCGGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTT 1009969 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026 |||| ||||||||||||||| ||| | ||| | || || ||||| || || ||||| Sbjct 1009968 GTTCGAGCTGTGCTGGTAAAGTTGCGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 1009909 Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||||| || || | ||| || ||||| || ||||| ||||||||||| Sbjct 1009908 TTGATGATGACCAGATTAATCAAGGGTTTGTTCTCACTTGTGTGGCTTATCCTAC 1009854 >seq178 Length=2153606 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/171 (74%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 180109 TGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCT-GC 180166 |||||||||| || ||||| ||| || |||||||| |||| || || || || || || Sbjct 356586 TGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGACTTGC 356644 Query 180167 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCAT 180226 ||| ||| | ||||||| | || || || || ||||| | ||||| || || || Sbjct 356645 TGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 356704 Query 180227 TTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCT 180277 ||||| || ||||||| ||| |||| |||| || ||||||||||| || Sbjct 356705 CTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610381967357760