Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq178 136 5e-27 seq1810 134 2e-26 seq1161 120 4e-22 >seq178 Length=2153606 Score = 136 bits (150), Expect = 5e-27 Identities = 133/170 (78%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 169765 GGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGC-ATTCGCTGT 169823 || |||||||||||||| ||||||||| || | || || | ||||| | | ||||| Sbjct 356588 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGACTTGCTGT 356647 Query 169824 ATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTC 169883 ||||| | || ||| |||| ||||| || |||||||||||||| ||||| ||||| Sbjct 356648 TTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 356707 Query 169884 AGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAA 169933 |||||||||||||||||| | || |||| || ||||| |||||||||| Sbjct 356708 TGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCTAA 356757 >seq1810 Length=8348134 Score = 134 bits (148), Expect = 2e-26 Identities = 154/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 |||||||||||| |||| ||||| ||||| ||||||||||| || ||||| || || || Sbjct 5906475 CAAAGGTTTGGTGTTCCGATGGGTTATGGTGGTCCTCATGCCGCGTTCTTGGCTACTTCA 5906416 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG--TCAGTCAGTAGATAGTGAAG 153885 | |||||||||||| ||| || || || ||| | || | ||| || ||| | || Sbjct 5906415 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATTGGTATTAGT--GTTGATTCTTCAG 5906358 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || |||| | | | || | ||||||||||| |||||||| ||||| ||||||| Sbjct 5906357 GAAAGCAAGCTTTGCGTATGGCTATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAG 5906298 Query 153946 CAACCAGTAACATCTGCACAGCTCA 153970 | || || |||||||| || ||||| Sbjct 5906297 CCACTAGCAACATCTGTACTGCTCA 5906273 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 153252 CGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATA 153311 || ||| || | |||||||| ||||||||| |||||||| |||||||||||||| Sbjct 5906988 CGTAACATTATGGAGAATCCAGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATC 5906929 Query 153312 TCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGA 153371 |||||||| | | ||| | | |||||| ||| ||| | ||||| || || ||||| Sbjct 5906928 TCTCAGGGTCGTCTCGAATCGCTGCTCAATTTCCAGACGGTGATCACCGATCTCACAGGG 5906869 Query 153372 TTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | || || | || ||||| || | ||||||| ||||| || || || || ||| Sbjct 5906868 CTTCCTATGTCGAATGCATCGCTTCTGGATGAAGGGACTGCGGCTGCGGAGGCTATG 5906812 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || ||||| || ||||| || | || || || ||||||||||| ||||||||||| Sbjct 5904483 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 5904424 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 |||||||| | ||||| || ||||| |||||| | |||||||| Sbjct 5904423 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCATTT 5904375 >seq1161 Length=2069815 Score = 120 bits (132), Expect = 4e-22 Identities = 152/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || ||||||||| | || ||||| || || |||||||||||||| ||||| || || || Sbjct 705518 CAGAGGTTTGGTGTACCGATGGGTTACGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCA 705577 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||||||||||| ||| ||||| || ||| | | || ||| || ||| | | Sbjct 705578 CAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCTTCGG 705635 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || |||| | | | || | |||||||| || |||||||| | || ||||||| Sbjct 705636 GAAAGCAAGCTTTGCGTATGGCTATGCAGACTAGGGAACAGCATATACGTAGGGACAAAG 705695 Query 153946 CAACCAGTAACATCTGCACAGCTCAGG 153972 | ||||| |||||||| || ||||||| Sbjct 705696 CTACCAGCAACATCTGTACTGCTCAGG 705722 Score = 109 bits (120), Expect = 6e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 ||||||||| |||||| || || ||||| |||||||||||||| ||||| ||||| Sbjct 705017 GAGAATCCTGCTTGGTATACTCAGTATACTCCTTATCAAGCTGAGATTTCTCAAGGAAGG 705076 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | ||| |||| | |||| ||| ||| | ||||| || ||||| || |||| || | Sbjct 705077 CTCGAATCTTTGCTTAATTTCCAGACGGTTATCACTGATCTTACTGGTCTACCTATGTCG 705136 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 ||||| || | | ||||||| ||||| || || ||||||||| Sbjct 705137 AACGCTTCGTTGCTCGATGAAGGTACTGCGGCTGCGGAAGCAATG 705181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579198725128960