Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq178 113 5e-20 >seq178 Length=2153606 Score = 113 bits (124), Expect = 5e-20 Identities = 130/174 (75%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 168220 CGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGT 168279 ||| | ||||||||||| ||||| ||||||||| || | || || || || |||| | Sbjct 356582 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGACT 356641 Query 168280 -GCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGG 168338 || || ||| | | ||||| | || || || ||||| ||||||| ||||| || || Sbjct 356642 TGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTAGG 356701 Query 168339 AATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCT 168392 |||||| || || ||||||| ||| | || |||| ||||||||||| ||||| Sbjct 356702 AATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574459640291520