Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq178 111 2e-19 >seq178 Length=2153606 Score = 111 bits (122), Expect = 2e-19 Identities = 132/178 (74%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 164138 TTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGC 164197 || |||||| |||||||||||||||||| |||||| || || | || |||||||| || Sbjct 356578 TTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGC 356637 Query 164198 ATCC-GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCC 164256 | || || ||| || ||||||| | || || || || ||||| | ||||| | Sbjct 356638 GACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTC 356697 Query 164257 TGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCT 164314 | || |||||||| || ||||||| ||| | || |||| || ||||||||||| || Sbjct 356698 TAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556911266727360