Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq178 132 6e-26 seq1810 120 4e-22 seq1161 113 5e-20 >seq178 Length=2153606 Score = 132 bits (146), Expect = 6e-26 Identities = 132/170 (78%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 172183 GGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGC-ATTTGCTGT 172241 |||||| | || ||||| ||| ||||||||| | ||||| |||| || | ||||||| Sbjct 356588 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGACTTGCTGT 356647 Query 172242 GTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTC 172301 ||| | | |||||| | || ||||| || |||||||||||||| ||||| ||||| Sbjct 356648 TTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 356707 Query 172302 AGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAA 172351 ||||| |||||||||||| | || |||| || ||||| |||||||||| Sbjct 356708 TGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCTAA 356757 >seq1810 Length=8348134 Score = 120 bits (132), Expect = 4e-22 Identities = 152/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| |||| ||||| || || ||||||||||| || ||||| || || || Sbjct 5906475 CAAAGGTTTGGTGTTCCGATGGGTTATGGTGGTCCTCATGCCGCGTTCTTGGCTACTTCA 5906416 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG--TCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| || || || ||| | || | ||| || ||| || Sbjct 5906415 CAAGAGTATAAGAGAATGATGCCAGGGAGGATTATTGGTATTAGT--GTTGATTCTTCAG 5906358 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || |||| | | | || | ||||||||||| |||||||| || || ||||||| Sbjct 5906357 GAAAGCAAGCTTTGCGTATGGCTATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAG 5906298 Query 158621 CAACCAGTAACATCTGCACAGCACAAG 158647 | || || |||||||| || || |||| Sbjct 5906297 CCACTAGCAACATCTGTACTGCTCAAG 5906271 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 157927 CGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATA 157986 || ||| || | |||||||| ||||||||| |||||||| |||||||||||||| Sbjct 5906988 CGTAACATTATGGAGAATCCAGCTTGGTACACTCAATACACTCCTTATCAAGCTGAGATC 5906929 Query 157987 TCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGA 158046 |||||||| | | ||| | | |||||| ||| ||| | ||||| || |||||||| Sbjct 5906928 TCTCAGGGTCGTCTCGAATCGCTGCTCAATTTCCAGACGGTGATCACCGATCTCACAGGG 5906869 Query 158047 CTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || | || ||||| || | ||||||| ||||| || || || || ||| Sbjct 5906868 CTTCCTATGTCGAATGCATCGCTTCTGGATGAAGGGACTGCGGCTGCGGAGGCTATG 5906812 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 5904483 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 5904424 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 |||||||| | ||||| |||||||| |||||| | |||||||| Sbjct 5904423 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGAAACATTTGGCACCATTT 5904375 >seq1161 Length=2069815 Score = 113 bits (124), Expect = 5e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || ||||||||| | || ||||| ||||| |||||||||||||| ||||| || || || Sbjct 705518 CAGAGGTTTGGTGTACCGATGGGTTACGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCA 705577 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| ||||| || ||| | | || ||| || ||| | Sbjct 705578 CAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCTTCGG 705635 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || |||| | | | || | |||||||| || |||||||| | || ||||||| Sbjct 705636 GAAAGCAAGCTTTGCGTATGGCTATGCAGACTAGGGAACAGCATATACGTAGGGACAAAG 705695 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 | ||||| |||||||| || || || Sbjct 705696 CTACCAGCAACATCTGTACTGCTCA 705720 Score = 109 bits (120), Expect = 6e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 ||||||||| |||||| || || ||||| |||||||||||||| ||||| ||||| Sbjct 705017 GAGAATCCTGCTTGGTATACTCAGTATACTCCTTATCAAGCTGAGATTTCTCAAGGAAGG 705076 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | ||| |||| | |||| ||| ||| | ||||| || || || || ||||| || | Sbjct 705077 CTCGAATCTTTGCTTAATTTCCAGACGGTTATCACTGATCTTACTGGTCTACCTATGTCG 705136 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 ||||| || | | ||||||| ||||| || || ||||||||| Sbjct 705137 AACGCTTCGTTGCTCGATGAAGGTACTGCGGCTGCGGAAGCAATG 705181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588036910355840