Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq178 109 6e-19 >seq178 Length=2153606 Score = 109 bits (120), Expect = 6e-19 Identities = 134/179 (75%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 162738 TTACCGTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAG 162796 || |||||| ||||||||||| ||||| ||| || ||||| || | ||||||||||| | Sbjct 356578 TTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAACTCCTGTTGCAGCTG 356636 Query 162797 CATCG-GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCC 162855 | | || || ||| || ||||||| | || || || ||| ||||| | ||||| Sbjct 356637 CGACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCT 356696 Query 162856 TTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCT 162914 | || ||| |||||| ||||||| ||| |||| |||| || |||||||||||||| Sbjct 356697 CTAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557570450708800