Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1208 100 2e-16 seq793 100 2e-16 seq1396 93.3 3e-14 seq1125 91.5 1e-13 seq236 91.5 1e-13 >seq1208 Length=4595443 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| || || | || | ||| |||| || ||||| || |||| ||| Sbjct 3925997 TCCTTTTGGATGTTGTAATCAGCGAGTGTGCGTCCATCTTCGAGCTGCTTACCGGAAAAG 3925938 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | |||||||||||| ||||||| ||||| || Sbjct 3925937 ATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTCAATCTTCGCCTTGAC--AT 3925880 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| || | ||||||| || | || ||||| ||||| || | ||||| Sbjct 3925879 --TATCGATTGTGTCTGAGCCCTCAACCTCCAAAGTAATGGTCTTTCCAGTACGGGTCTT 3925822 Query 34967 CACAAAGATCTGCATA 34982 |||||| || |||||| Sbjct 3925821 CACAAAAATTTGCATA 3925806 >seq793 Length=772624 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || ||||| ||||| | ||| ||| | | || || ||||| || |||||||| Sbjct 611126 TTCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAA 611067 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | || |||||||| ||||| ||||||| Sbjct 611066 GATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCTTTGACGTT 611007 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | |||||| || | || ||||| || || || |||||||| || Sbjct 611006 GTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGAC 610947 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 610946 AAAGATCTGCATA 610934 >seq1396 Length=1446835 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || |||||||| ||||| || |||| | | | || |||| Sbjct 400589 CAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCCAAGGTACGACCATC 400530 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| ||| ||||||||||| || | | |||||||| | || | || ||||| || Sbjct 400529 CTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATC 400470 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || ||| | || | || | ||| || || | ||| ||||| Sbjct 400469 CTGAATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGT 400410 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||||||||| || || ||||||||| Sbjct 400409 CTTTCCAGTGAGAGTCTTGACGAAAATCTGCATA 400376 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG-- 34812 ||||| | || | ||| |||||||||| ||| || ||||||||||| ||||| | Sbjct 400375 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCC 400316 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | || || || |||||||| ||||| || | || |||||||| | | Sbjct 400315 AAAG--TTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTG 400258 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCC 34928 | | ||||||||||| ||| || |||||| || | ||||| || | | Sbjct 400257 GAATACCCTCCTTGTCCTGAATTTTAGCTTTGAC--AT--TGTCGATGGTGTCGGAGCTC 400202 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | || ||||| ||||| || | ||||| || || || |||||| Sbjct 400201 TCCACCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCATA 400148 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC--CGAAAGGCTTCGTTCATCAT 34830 |||||||||| || || ||||| ||||||||||| | |||| | || |||| | Sbjct 400813 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAAAG--TGCGACCATCCT 400756 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | |||||||| || || || || || || |||||||| | || | || |||||||| Sbjct 400755 CAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCT 400696 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || ||| | || | ||| | ||| || || | ||| || |||| Sbjct 400695 GGATCTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTTT 400636 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||| || ||||||||||| Sbjct 400635 TGCCAGTCAAAGTCTTGACGAAGATCTGCAT 400605 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| ||||| ||||| ||||| | || | || | || || Sbjct 401041 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCCTCG 400982 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||||||| || || || || || ||||||||| | || | || |||||||| Sbjct 400981 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGG 400922 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || | ||| || || | || ||||| || Sbjct 400921 ATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTC 400862 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||||||| || ||||||||| Sbjct 400861 CCGGTTAAAGTCTTCACGAAAATCTGCATA 400832 >seq1125 Length=2998257 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | | | ||||| | || || ||||| |||||||| || Sbjct 292784 TTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAA 292843 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||| |||||||| | || | || |||||||| ||||| ||||| | Sbjct 292844 AATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 292901 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| ||| | ||| || |||| ||| || || || ||||| || || | Sbjct 292902 T--TGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTT 292959 Query 34966 TCACAAAGATCTGCATATT 34984 |||| ||||||||||| || Sbjct 292960 TCACGAAGATCTGCATCTT 292978 >seq236 Length=1640546 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | || | || | || || |||||||| ||||| || Sbjct 1089226 TTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAA 1089167 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||| |||||||| | || | || |||||||| |||||| ||| || | Sbjct 1089166 AATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCAC--A 1089109 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || || ||| || || | ||||||||| || ||||| || || | Sbjct 1089108 T--TGTCGATGGTGTCTGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTT 1089051 Query 34966 TCACAAAGATCTGCATATT 34984 |||| ||||||||||| || Sbjct 1089050 TCACGAAGATCTGCATCTT 1089032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625908618432