Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq178 116 4e-21 >seq178 Length=2153606 Score = 116 bits (128), Expect = 4e-21 Identities = 131/174 (75%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 84426 AGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGT 84485 || ||||| || || ||||||| |||| ||| ||||||| || || ||||| || || Sbjct 356755 AGAATGTTGTGCTCAGCCTGGAGTACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGA 356696 Query 84486 GGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGAT-GC 84544 ||||| |||||||| ||| || ||||| | ||||| | | ||| |||||| | || Sbjct 356695 GGCATACCATCAGAAAAACTTCCCTGCCCAATTGGATAGATCAAGAAAACAGCAAGTCGC 356636 Query 84545 CGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACG 84598 |||||||| |||| || || |||||| ||||| ||||||||||| ||||| Sbjct 356635 AGCTGCAACAGGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACG 356582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571259718051520