Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq178 98.7 3e-16 >seq178 Length=2153606 Score = 98.7 bits (108), Expect = 3e-16 Identities = 125/171 (73%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCT-CTCGC 26220 || || ||| | || ||||| |||||||||| || | || | | || || || || Sbjct 356585 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGACTTGC 356644 Query 26221 AGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTAT 26280 || ||||| | ||||| | || || || |||||| |||||| |||||||| || || Sbjct 356645 TGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 356704 Query 26281 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACT 26331 |||||||||||| ||||||||| | ||| |||| || || || || || || Sbjct 356705 CTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146723012821056