Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq178 127 6e-25 >seq178 Length=2153606 Score = 127 bits (140), Expect = 6e-25 Identities = 141/186 (76%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 5648 AGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGA 5707 || || ||||| || ||||||| ||| | ||||||||| |||||||||||||| || ||| Sbjct 356755 AGAATGTTGTGCTCAGCCTGGAGTACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGA 356696 Query 5708 GGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG--AGTAGG 5765 |||||||||||| ||||||||||| || | || || | || || || | ||| | Sbjct 356695 GGCATACCATCAGAAAAACTTCCCTGCCCAATTGGATAGATCAAGAAAACAGCAAGT-CG 356637 Query 5766 CTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAAC 5825 | || ||||| || | ||||||||| || |||||| || ||||| || | | | ||| Sbjct 356636 CAGCTGCAACAGGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAAC 356577 Query 5826 TAAGTT 5831 |||||| Sbjct 356576 TAAGTT 356571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152646076083984