Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq204 140 3e-28 seq793 131 1e-25 seq1177 125 6e-24 seq1396 116 3e-21 seq971 98.7 8e-16 seq1328 91.5 1e-13 >seq204 Length=2333866 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | ||| | || |||||||| || |||||||| || || |||||||||||| Sbjct 1139362 CCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGCG 1139303 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || |||||||| || || || || || ||||| || ||||| || || Sbjct 1139302 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGGG 1139243 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || || ||| ||| | || | ||||| || | ||| || Sbjct 1139242 ATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAACC 1139183 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | || || || |||| ||||| || || |||||||| Sbjct 1139182 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 1139136 >seq793 Length=772624 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| || | ||| || || ||||| |||||||| || || ||||||||||| Sbjct 610933 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCGGCC 610874 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | || ||||| || || || || | || || || || ||| Sbjct 610873 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGA 610814 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||| || || ||| || ||| | || | |||||||| | || || Sbjct 610813 ATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 610754 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || ||||| || | ||||| || || || ||||| Sbjct 610753 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq1177 Length=2734319 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| || | ||| || || ||||| |||||||| || || ||||||||||| Sbjct 987953 CCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCGGCC 987894 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | || ||||| || || ||||| | || || || || ||| Sbjct 987893 AAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 987834 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || ||| || ||| | || | ||||| || | || || Sbjct 987833 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACC 987774 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || |||| ||||| || || || ||||| Sbjct 987773 TCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq1396 Length=1446835 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| ||||| ||||| || || ||||||||||| || | || | | |||| || Sbjct 399901 ACCAAATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAACGTACGGCCATCCTCT 399842 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | | ||| ||||| || |||||||| || || ||||| Sbjct 399841 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGG 399782 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | || | |||||||| ||||||| || || |||| || || Sbjct 399781 ATCTTGGCTTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTT 399722 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| || || || |||||||| Sbjct 399721 CCGGTGAGAGTCTTAACGAAGATCTGCAT 399693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| ||||| || || || ||||| || || | || | | || || Sbjct 401041 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCGTCCTCG 400982 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || || || || | |||||| || || || || || ||||| || || || Sbjct 400981 AGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCCTTGTCCTGG 400922 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | ||||| || || |||| || || Sbjct 400921 ATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTC 400862 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||||||| || || || |||||||| Sbjct 400861 CCGGTTAAAGTCTTCACGAAAATCTGCAT 400833 >seq971 Length=4928269 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | | || || | |||||| ||||| ||||| || || |||||||| | Sbjct 3107451 TTCCACCTCTGAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCG 3107510 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | |||| | |||| || | ||||||||| |||||||||| | ||||||||||| | Sbjct 3107511 CTAAGGTTCGGCCATCTTCGAGTTGCTTACCAGCAAATATCAGCCTTTGTTGATCGGGTG 3107570 Query 101361 GAATGCCTTCTTTATCTTG 101379 | || || ||||| || || Sbjct 3107571 GTATACCCTCTTTGTCCTG 3107589 >seq1328 Length=1576597 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || |||||||| || | || | |||| || | |||| Sbjct 273311 TGAAGAGTTGACTCCTTCTGGATGTTGTAATCCGCAAGCGTACGACCATCCTCGAGTTGC 273252 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | | ||| || || || || || |||||||||||||| || || Sbjct 273251 TTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTATCTTGGATCTTG 273192 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || || || |||| || ||||| || | || || || || Sbjct 273191 GCCTTGACGTTATCGATGGTATCTGAGCTTTCGACCTCAAGTGTTATAGTCTTCCCTGTA 273132 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || ||||| |||||||| Sbjct 273131 AGAGTCTTAACAAAGATCTGCAT 273109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396269011174008