Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1208 104 2e-17 seq1396 91.5 1e-13 seq406 89.7 4e-13 seq793 87.8 1e-12 >seq1208 Length=4595443 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| ||||| || |||||||||| || | || Sbjct 3926024 AGACGAAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGT 3925965 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 | || || | ||||||||||| ||| || |||| ||| || || | ||||| | ||||| Sbjct 3925964 CCATCTTCGAGCTGCTTACCGGAAAAGATGAGTCTCTGCTGGTCTGGTGGGATC-CCCTC 3925906 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||| || ||| | | | | ||||| |||| ||||||| || Sbjct 3925905 CTTGTCCTCAATCTTCGCCTTGACATTATCGATTGTGTCTGAGCCCTCAACCTCCAAAGT 3925846 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || ||||| || || || |||||||| ||||| Sbjct 3925845 AATGGTCTTTCCAGTACGGGTCTTCACAAAAATTTGCAT 3925807 >seq1396 Length=1446835 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| || ||||| ||||| |||| | | ||| Sbjct 400366 AGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTG 400307 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | || || || ||||| |||| || ||| || |||| |||| |||||| Sbjct 400306 CCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGTGGAATACCCTCC 400247 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | || || ||||||||||| || Sbjct 400246 TTGTCCTGAATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCCAAAGTG 400187 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || || ||||| ||||| Sbjct 400186 ATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || |||||| || || |||||||| | | | ||| Sbjct 400594 AGACGCAAGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAATCCGCCAAGGTACGA 400535 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| |||||||| |||| | ||| || |||| || | || ||| Sbjct 400534 CCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCC 400475 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || || | | | ||||| ||||||||||| || Sbjct 400474 TTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCCAAGGTG 400415 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | ||| || || ||||||||||| Sbjct 400414 ATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 400377 >seq406 Length=3140938 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| ||| |||||||| || || |||||| || || ||||| || | | Sbjct 2970412 CCACCCCTAAGCCTCAAGACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTCCGCT 2970471 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||| | || || | || ||||| ||||||||||| | ||||||||| | || Sbjct 2970472 AGTGTTCGACCATCTTCAAGTTGTTTACCAGCAAATATCAGCCTCTGTTGATCAGGTGGT 2970531 Query 48660 ACGCCCTCCTTGTC 48673 | ||||| ||||| Sbjct 2970532 ATTCCCTCTTTGTC 2970545 >seq793 Length=772624 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| || ||||| |||| ||| ||| |||| || | ||||||||||||||| Sbjct 611125 TCCTTTTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAG 611066 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | || || |||| || | || |||||||| |||||| ||| || Sbjct 611065 ATGAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTG 611006 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||| ||||||| ||||| || || || |||| ||| || ||| Sbjct 611005 TCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACA 610946 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 610945 AAGATCTGCAT 610935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928574635912