Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1482 104 5e-17 >seq1482 Length=1091896 Score = 104 bits (114), Expect = 5e-17 Identities = 146/199 (73%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGT 150421 ||||||||| | | ||| || || ||| ||||| ||| |||| |||||||| |||||| Sbjct 371798 GATTCTTTCAAGGAGAACAAAGAACAATCCGGTGC-TTA-TTGGAGAACCAGGAGTTGGT 371741 Query 150422 AAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCT 150481 |||||| | ||||| || ||||||||| | || | || || ||||| || | | Sbjct 371740 AAAACAGCTGTGGTTGAAGGGTTAGCACAAAGGATTGTCAAAGGAGATGTACCCAACAGT 371681 Query 150482 ATGAAAGATGTTGAAATT-CTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTA 150540 | | |||| ||| ||| |||||||| | ||||||||||| ||| ||| |||| || Sbjct 371680 CTTACTGATG-TGAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCGGGTGCTAAATA 371622 Query 150541 TCGTGGTGAATTCGAAGAA 150559 || || ||||| |||||| Sbjct 371621 CCGAGGAGAATTTGAAGAA 371603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147561816392112