Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq178 118 1e-21 >seq178 Length=2153606 Score = 118 bits (130), Expect = 1e-21 Identities = 139/187 (74%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 162845 AACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTAT 162904 ||||| || ||| | ||||||||||||||||| ||||||||| || | || || Sbjct 356571 AACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTG 356630 Query 162905 CTGCAGC-ATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCA 162963 | || || | | ||||| |||||| ||||||| | || || || ||| ||||| | Sbjct 356631 CAGCTGCGACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGT 356690 Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023 |||||||| || || ||||||||||| |||| ||| | || |||| || ||||||||| Sbjct 356691 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAAC 356750 Query 163024 ATCCTAA 163030 || |||| Sbjct 356751 ATTCTAA 356757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553071360039360