Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq178 102 9e-17 seq1259 84.2 2e-11 >seq178 Length=2153606 Score = 102 bits (112), Expect = 9e-17 Identities = 124/168 (74%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 163255 GGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCC-GCAGT 163313 |||||||| || ||||| ||| ||||| || | ||||||||||| || | || || Sbjct 356588 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTGCAGCTGCGACTTGCTGT 356647 Query 163314 CTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTC 163373 ||| || ||||||| | || || || ||| ||||| | ||||| || || ||||| Sbjct 356648 TTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 356707 Query 163374 TGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 163421 ||| || ||||||| ||| |||| |||| || ||||||||||| || Sbjct 356708 TGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAACATTCT 356755 >seq1259 Length=1985952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 164052 AAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTT 164111 |||| || |||||||| | || ||||| ||||| ||||||||||| | |||||||| Sbjct 147062 AAGACGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTCTT 147121 Query 164112 GTCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGA 164171 | || || ||||| || ||| | || || ||| | ||||| || || | ||||| ||| Sbjct 147122 GCCGAGCCGGTGCGTGTTCCACTTGCGCGGGTCAGATTGTGTCAGGCAACGTTGACCAGT 147181 Query 164172 GTGATCAGTCATTCCTAGACGATGATCAGATTGCAGCAGGATT-CGTGCTTACGTGTGTA 164230 ||| ||||| || || ||| || ||| || ||| || || | || ||||| Sbjct 147182 CGGATGGTTCATTTCTCGAGGATAGCCACTTTG-AGAAGGGTTATGTCTTGACTTGTGTG 147240 Query 164231 GCATATCCAACATCTGATTGTGT 164253 || || ||| || || ||||| Sbjct 147241 GCTTACCCACAGTCAGACTGTGT 147263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563195914006720