Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1639 118 2e-21 >seq1639 Length=5101707 Score = 118 bits (130), Expect = 2e-21 Identities = 385/580 (66%), Gaps = 20/580 (3%) Strand=Plus/Minus Query 25473 AGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGA 25532 ||| || ||||||||||||||||| || || || ||||||||| ||||| | || Sbjct 2280308 AGAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCGTTCTGGACCGCTGAAGAAGTAGA 2280249 Query 25533 TCTGGCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACG---AGCAGCATTTTC 25588 ||| | | |||| || ||| | | | ||| ||| |||| | | || || Sbjct 2280248 TCTATCACAAGACAATCGCGATTGGGA-GAACAATCTCAACGACGGTGAACGTCACTTCA 2280190 Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 |||| |||| | || ||||| || || ||||| || || ||| |||||||| Sbjct 2280189 TCAAACACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCGTGTTAGAGAATCTCGCTT 2280130 Query 25649 AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATG 25707 |||||| || || || | |||||| ||| |||||| ||||||||||| Sbjct 2280129 CTCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGC-GTGCTTTCTATGGTTTCCAGATC 2280071 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGA 25766 || || ||||| | ||||| ||| ||||| ||||| ||| ||||| || | ||| Sbjct 2280070 GCGATTGAAAACATTCACTCCGAGATGTATAGTCTCCTTCTCGAT-ACGTATATCAAAGA 2280012 Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 | |||||||||| || ||| | || || || || || || || || ||| Sbjct 2280011 TAACAAAGAGAGAGATCATCTATTTCGCGCGATTGAAACGATTCCTTGCGTCGCGAAGAA 2279952 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGC-TACGTTTGGCGAGCGGCTGG 25885 || | |||||| ||||| |||||| | | || | | || || | || || | | Sbjct 2279951 AGCTCAGTGGGCGATGAAATGGATC----GACGGATCTCAAACCTTCGCTGAACGAATTG 2279896 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGG 25944 |||| || ||| ||| || |||||||| ||| || | ||||| ||||||||||| Sbjct 2279895 TAGCTTTCGCTTGTGTTGAAGGCATCTTCTTCTCTGGAAGCTTTTGC-TCCATCTTCTGG 2279837 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGG 26002 || ||| | | | || | |||||| ||| | ||||| || ||||| | ||| | | Sbjct 2279836 CTTAAG-AAACGAGGTCTCATGCCTGGG-TTAACTTTCTCAAACGAATTGATCTCACGAG 2279779 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 |||| || | ||| | ||||| || ||| | |||||||| Sbjct 2279778 ACGAAGGCTTACACTGCGATTTCGCTTGCTTACTCTACAC 2279739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928822229071360