Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq178 159 4e-34 >seq178 Length=2153606 Score = 159 bits (176), Expect = 4e-34 Identities = 147/185 (79%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 8594 AACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTG 8653 ||||| || ||| || || |||||||||||||| ||||||||| || ||||||||| Sbjct 356571 AACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTG 356630 Query 8654 CCGCTGCTTCT-GCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGT 8712 | ||||| || ||||| ||| | ||||||| |||| || || || ||||||||| Sbjct 356631 CAGCTGCGACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGT 356690 Query 8713 ATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAAC 8772 |||||||| || ||||| ||||| ||||||| |||| |||| ||||||||||||||||| Sbjct 356691 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAAC 356750 Query 8773 ATCCT 8777 || || Sbjct 356751 ATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516467449536000