Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq178 145 8e-30 seq3 114 1e-20 seq268 96.9 4e-15 >seq178 Length=2153606 Score = 145 bits (160), Expect = 8e-30 Identities = 144/185 (78%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 161222 AACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCG 161281 ||||| || ||||||||| ||||||||||||||| || ||||| || ||||||| | Sbjct 356571 AACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTG 356630 Query 161282 CTGCAGCGAGT-GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCA 161340 | || |||| | || || ||| || ||||||| | || || || ||| ||||||| Sbjct 356631 CAGCTGCGACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGT 356690 Query 161341 ATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 161400 |||||||| || ||||||||||| ||||||| ||| |||| |||| || ||||||||| Sbjct 356691 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAAC 356750 Query 161401 ATTCT 161405 ||||| Sbjct 356751 ATTCT 356755 >seq3 Length=3374423 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 |||||| |||||| ||| | ||||| || ||||||||||| || |||| | ||| Sbjct 1010048 GTGTGACGACGACGTTTACGTTCTTGATGCGGCTGAGGAAGCTGGAATCGATTTGCCTTA 1009989 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||||||| ||||| || ||| | | ||||| | || || Sbjct 1009988 CTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGCGTCTGGATCTGTTGA 1009929 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504 ||| |||||| ||||| || |||||||| || || || || |||| ||||| Sbjct 1009928 CCAGTCTGACCAGAGTTTCCTTGATGATGACCAGATTAATCAAGGGTTTGTTCTCACTTG 1009869 Query 158505 TGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGA 158555 ||| |||||||||| |||| | ||||| || |||| ||||| || Sbjct 1009868 TGTGGCTTATCCTACTTCTGATGTTACCATTGAAACCCACAAAGAAGACGA 1009818 >seq268 Length=2618192 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| ||||| ||| ||| |||| ||||| || |||||||| || |||| | || Sbjct 1977069 GTGCGAAGAAGACGTCTACGTCCTCGACGCTGCAGAGGAAGCCGGAATCGACTTGCCCTA 1977010 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||| || || || || ||| ||||||||||| |||| || Sbjct 1977009 CTCATGCCGTGCCGGATCTTGCTCAAGTTGCGCCGGGAAAGTCGTCTCTGGCTCCGTTGA 1976950 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504 ||| |||||| |||| | |||||||| || || | ||| | | |||| || Sbjct 1976949 CCAGTCGGACCAGAGCTTCTTAGACGATGAGCAGATAAACGATGGGTATGTCTTGACCTG 1976890 Query 158505 TGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGA 158552 ||| ||||||| || |||| || || || || |||| ||||| Sbjct 1976889 TGTGGCTTATCCGACTTCTGATGTCGTCATCGAAACCCACAAAGAAGA 1976842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547733889743040