Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq178 116 1e-21 >seq178 Length=2153606 Score = 116 bits (128), Expect = 1e-21 Identities = 141/187 (75%), Gaps = 5/187 (3%) Strand=Plus/Minus Query 18288 AGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGA 18347 || || ||||| || || |||| ||| | ||| || ||||||||||| || || ||| Sbjct 356755 AGAATGTTGTGCTCAGCCTGGAGTACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGA 356696 Query 18348 GGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAG-- 18404 |||||||||||||| ||||| || || |||| ||||| | | ||||| || | ||| Sbjct 356695 GGCATACCATCAGAAAAACTTCCCTGCCCAATTGGATAGATCAAGAAA-ACAG-CAAGTC 356638 Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464 |||||||| || || | ||||| |||||| |||||| || |||||||| || | || Sbjct 356637 GCAGCTGCAACAGGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 356578 Query 18465 CTAAGTT 18471 ||||||| Sbjct 356577 CTAAGTT 356571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151314906814736