Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 2e-14 seq1259 86.0 8e-12 >seq3 Length=3374423 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871 ||||| ||||| || || ||||| || || |||||||| ||| | | || || ||| Sbjct 1009845 ACATCAGAAGTAGGATAAGCCACACAAGTGAGAACAAACCCTTGATTAATCTGGTCATCA 1009904 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 || || || || || || || |||| || || ||| ||||||||||| | Sbjct 1009905 TCAAGGAAACTCTGGTCAGACTGGTCAACAGATCCAGACGCAACTTTACCAGCACAGCTC 1009964 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 ||||| | ||||||||| || || ||||||| ||| | || ||||| ||||| || || Sbjct 1009965 GAACAAGAACCAGCACGGCAAGAGTAAGGCAAATCGATTCCAGCTTCCTCAGCCGCATCA 1010024 Query 102992 AGAATATATTGATCATCCTCACAGGTGATATCATGATCACCTTCGGATGT 103041 |||| || || || ||||| || || || |||||||| | ||| Sbjct 1010025 AGAACGTAAACGTCGTCGTCACACTCAATCTCTTGCTCACCTTCTGGTGT 1010074 >seq1259 Length=1985952 Score = 86.0 bits (94), Expect = 8e-12 Identities = 134/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 102823 TGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCT---AGTTGATCGTCATCCAGAAA 102879 |||||| ||||| || |||| ||| |||| ||||| ||| | | || || ||||| Sbjct 147249 TGGGTAAGCCACACAAGTCAAGACATAACC--CTTCTCAAAGTGGCTA-TCCTCGAGAAA 147193 Query 102880 GGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGC 102939 || ||| || || || | || || |||||| ||| || ||||| |||||||| Sbjct 147192 TGAACCATCCGACTGGTCAACGTTGCCTGACACAATCTGACCCGCGCAAGTGGAACACGC 147133 Query 102940 ACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATA 102999 ||| || || || || ||||||| ||||| ||||| || ||||| || || | || || Sbjct 147132 ACCGGCTCGGCAAGAGTAAGGCAAGTCAACTCCTGCCTCTTCAGCTGCATCCAAGATGTA 147073 Query 103000 TTGATCATC 103008 ||| || || Sbjct 147072 TTGGTCGTC 147064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633498205619520