Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq178 123 7e-24 >seq178 Length=2153606 Score = 123 bits (136), Expect = 7e-24 Identities = 139/185 (75%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 21924 AGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAG 21983 ||||| |||||||||||||||| || | ||| ||||||| || || || || || | Sbjct 356755 AGAATGTTGTGCTCAGCCTGGAGTACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGA 356696 Query 21984 GGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGC-AGTCGC 22042 |||||| ||||||||||| ||||| |||| ||||| | | ||| ||||| |||||| Sbjct 356695 GGCATACCATCAGAAAAACTTCCCTGCCCAATTGGATAGATCAAGAAAACAGCAAGTCGC 356636 Query 22043 AGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCT 22102 ||| || ||||||| || || |||||| ||||| || | ||| || || || | || Sbjct 356635 AGCTGCAACAGGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACT 356576 Query 22103 AAGTT 22107 ||||| Sbjct 356575 AAGTT 356571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146204624788320