Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq178 136 5e-27 seq1810 114 1e-20 seq1161 107 2e-18 >seq178 Length=2153606 Score = 136 bits (150), Expect = 5e-27 Identities = 133/170 (78%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 124500 TTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAA 124559 |||||||||| ||||| || |||| || | |||||||||||||||||| ||||| || | Sbjct 356757 TTAGAATGTTGTGCTCAGCCTGGAGTACAATCATAAAGTTGAAAGTACCAGAGATTCCTA 356698 Query 124560 GTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAAT- 124618 | |||||||||||||| || ||||| |||| ||| || | ||||| ||||| | | Sbjct 356697 GAGGCATACCATCAGAAAAACTTCCCTGCCCAATTGGATAGATCAAGAAAACAGCAAGTC 356638 Query 124619 GCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCC 124668 ||||| | || || | |||||| |||||| |||||||||||||| || Sbjct 356637 GCAGCTGCAACAGGAGTTGAATATGCAACAGCAATCCAAGGACGCATACC 356588 >seq1810 Length=8348134 Score = 114 bits (126), Expect = 1e-20 Identities = 156/213 (73%), Gaps = 16/213 (8%) Strand=Plus/Plus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || |||||||| || ||||||||||| |||||||| | Sbjct 5906271 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTGTCCCTCCTAATATGCTGTTCTCTAGTCT 5906330 Query 139375 GTAGTGCTAATCTGTATGCAG-GATTGCCTTCGCTG-----TCCACTGACTGA--CCTAC 139426 | | || | || ||| | |||| ||| ||| || || ||| | || | Sbjct 5906331 GCATAGCCA-----TACGCAAAGCTTGCTTTC-CTGAAGAATCAAC--ACTAATACCAAT 5906382 Query 139427 AATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGG 139486 ||| || || || ||| |||||||||||| | || || || ||||| || |||||||| Sbjct 5906383 AATCCTCCCTGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAGAACGCGGCATGAGG 5906442 Query 139487 ACCTCCGTATCCCATAGGAATACCAAACCTTTG 139519 ||| || || ||||| |||| |||||||||||| Sbjct 5906443 ACCACCATAACCCATCGGAACACCAAACCTTTG 5906475 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || ||||| ||||||| | || ||||| || | || || | || Sbjct 5906812 CATAGCCTCCGCAGCCGCAGTCCCTTCATCCAGAAGCGATGCATTCGACATAGGAAGCCC 5906871 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| || || ||||| | ||| ||| |||||| | | ||| | | |||||||| || Sbjct 5906872 TGTGAGATCGGTGATCACCGTCTGGAAATTGAGCAGCGATTCGAGACGACCCTGAGAGAT 5906931 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCG 140035 |||||||||||| |||||||| ||||||||| |||||||| | || ||| || Sbjct 5906932 CTCAGCTTGATAAGGAGTGTATTGAGTGTACCAAGCTGGATTCTCCATAATGTTACG 5906988 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | |||||| |||||||| ||||| | |||||||| ||||||||||| Sbjct 5904375 AAATGGTGCCAAATGTTTCTTCACACCAATGGGACCCATACCAGGACCACCACCTCCATG 5904434 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 5904435 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 5904483 >seq1161 Length=2069815 Score = 107 bits (118), Expect = 2e-18 Identities = 152/210 (72%), Gaps = 14/210 (7%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || || |||||||| ||||| |||||||| || | |||||||| || ||||| || Sbjct 705720 TGAGCAGTACAGATGTTGCTGGTAGCTTTGTCCCTACGTATATGCTGTTCCCTAGTCTGC 705661 Query 139377 AGTGCTAATCTGTATGCAG-GATTGCCTTCGCTG----TC--CACTGACTGACCTACAAT 139429 | || | || ||| | |||| ||| | || |||| || ||| | ||| Sbjct 705660 ATAGCCA-----TACGCAAAGCTTGCTTTCCCGAAGAATCAACACTAAC--ACCAATAAT 705608 Query 139430 TCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACC 139489 || ||||| ||| |||||||||||| | || || || ||||| |||||||||||||| Sbjct 705607 CCTCCCAGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAGAAAGCAGCATGAGGACC 705548 Query 139490 TCCGTATCCCATAGGAATACCAAACCTTTG 139519 ||||| ||||| || | ||||||||| || Sbjct 705547 ACCGTAACCCATCGGTACACCAAACCTCTG 705518 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| || || || ||||| ||||||| | | || ||||| | || |||| || Sbjct 705181 CATTGCTTCCGCAGCCGCAGTACCTTCATCGAGCAACGAAGCGTTCGACATAGGTAGACC 705122 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| || ||||| | ||| ||| |||| | |||| ||| | ||||| ||||| || Sbjct 705121 AGTAAGATCAGTGATAACCGTCTGGAAATTAAGCAAAGATTCGAGCCTTCCTTGAGAAAT 705062 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||||||||| ||||| || || |||||| ||||||||| Sbjct 705061 CTCAGCTTGATAAGGAGTATACTGAGTATACCAAGCAGGATTCTC 705017 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 138293 TACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGAT 138352 |||||||||||| | ||| |||||||| | ||| || || || ||||||||||||| || Sbjct 707572 TACCTGTGCATTCATATTAGCACCATCCATATAAACTTGGCCTCCATTGTCATGAATTAT 707513 Query 138353 CTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408 || || |||| |||| |||| | || |||||||| || |||||||||| Sbjct 707512 ATTGCAGATCTCGTTGATACCCTCTTCATAGACTCCATGAGTTGAAGGATATGTAA 707457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578984330338880