Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3 143 4e-29 seq1752 132 6e-26 seq178 125 1e-23 seq20 123 3e-23 seq268 89.7 7e-13 >seq3 Length=3374423 Score = 143 bits (158), Expect = 4e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | |||||||| ||||||||||||| ||||| || ||||||||||| ||| Sbjct 1009821 TCTTCTTTGTGGGTTTCAATGGTAACATCAGAAGTAGGATAAGCCACACAAGTGAGAACA 1009880 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 ||||||| | ||| || |||||||| | ||| ||| ||| ||||| || | ||| Sbjct 1009881 AACCCTTGATTAATCTGGTCATCATCAAGGAAACTCTGGTCAGACTGGTCAACAGATCCA 1009940 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || ||| ||||| ||||| ||||| | ||| ||||| |||||||| ||||| Sbjct 1009941 GACGCAACTTTACCAGCACAGCTCGAACAAGAACCAGCACGGCAAGAGTAAGGCAAATCG 1010000 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | ||| ||||||| || |||||||| | ||| Sbjct 1010001 ATTCCAGCTTCCTCAGCCGCATCAAGAACGTA 1010032 >seq1752 Length=3388531 Score = 132 bits (146), Expect = 6e-26 Identities = 184/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || ||||| ||||| ||| | || ||| ||||| |||||||||||||| || || || Sbjct 1788552 GCAGGAAGCACATGGGAATTCTCGGGGTGGAAATTGTCATTTGGACCATAAAGATTAGTG 1788611 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105 ||||| ||||| |||| || || ||| |||| || ||||||||||| || Sbjct 1788612 GGCATACCGGAGATGGCATCCCATTGATGCTGAATCCGGTAAGCTTGACACATCTTAATC 1788671 Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165 || |||||||| ||||| || || | || ||| | |||||||| |||||| | | ||| Sbjct 1788672 CCTGCAATCTTGGCAATGGCGTACCATTCGTTAGTCGGTTCAAGCGGACCAGTGAGAAGA 1788731 Query 47166 TATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAAT 47225 ||| ||||||||| | ||||| || |||||||| || ||||| || || Sbjct 1788732 GCGGATTCAGGAATAGGTTGGGGAGCGAATTTGGGGTAAATGCAAGAGGAACCGAGGAAG 1788791 Query 47226 AAAAGTTTCTTAACACCA 47243 | |||||| | |||||| Sbjct 1788792 AGGAGTTTCGTCACACCA 1788809 >seq178 Length=2153606 Score = 125 bits (138), Expect = 1e-23 Identities = 133/174 (76%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 27187 AGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGA 27246 || || ||||| || ||||||| ||||| ||| |||| |||||||||||||| || ||| Sbjct 356755 AGAATGTTGTGCTCAGCCTGGAGTACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGA 356696 Query 27247 GGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGC-ACTCGC 27305 |||||| |||| || ||| || || || | ||||||| | ||| || || | |||| Sbjct 356695 GGCATACCATCAGAAAAACTTCCCTGCCCAATTGGATAGATCAAGAAAACAGCAAGTCGC 356636 Query 27306 AGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACG 27359 ||| || || |||| |||||||| ||| ||||| ||||||||||| | ||| Sbjct 356635 AGCTGCAACAGGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACG 356582 >seq20 Length=2941094 Score = 123 bits (136), Expect = 3e-23 Identities = 252/373 (68%), Gaps = 1/373 (0%) Strand=Plus/Minus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || ||||| || |||||| | || |||| ||||| ||||| |||||||| || || || Sbjct 179885 GCAGGAAGCACGTGCGAATTCTCCAGGTGGAAATTGTCATTAGGACCATAGAGATTAGTG 179826 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105 ||||| |||||| |||| |||| | ||| |||| |||||||| |||| || Sbjct 179825 GGCATGCCAGAGATTGCATCCCATCCGTGCTGAATCCGGTAAGCCTGACAAGTCTTAATC 179766 Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165 || || ||||| ||||||||||| | |||||| | |||||||| || | | | | | Sbjct 179765 CCTGCGATCTTAGCAATAGCATACCACTCATTAGTTGGTTCAAGCGGTGCGGTTAACAAA 179706 Query 47166 TATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAAT 47225 || ||| || || | ||||| || |||||||| ||||| ||||| || Sbjct 179705 GCAGACTCAGGAATTGGCTGAGGAGCAAATTTAGGGTAAATGCAAGAAGATCCAAGGAAG 179646 Query 47226 AAAAGTTTCTTAACACCAAACTTACGTGCAGAATGAATGATGTTTGATTGAATCATCAAA 47285 | ||| ||||| || || || | ||||| ||||| | || | |||||| | Sbjct 179645 AGAAGCTTCTTCACGCCGTGCTCATAAGCAGAGTGAATCACATTGGTCTGAATCTGGAGG 179586 Query 47286 TTATCATAGATGAAGTGTCCGGGATAATCCTTATTAGCACCAATACCACCCACCTTTGCA 47345 || || ||||| | | |||||| || ||||| ||| ||||| || || || Sbjct 179585 TTGACACCAATGAAATCAGCAGGATAAGTGTTGTTAGCGTGAATCCCACCAACTTTAGCT 179526 Query 47346 GCAGC-AAGATAA 47357 || || | ||||| Sbjct 179525 GCTGCTAGGATAA 179513 >seq268 Length=2618192 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | ||||| || | ||||||||||| ||||| || ||||| || | ||| Sbjct 1976842 TCTTCTTTGTGGGTTTCGATGACGACATCAGAAGTCGGATAAGCCACACAGGTCAAGACA 1976901 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 |||| || | || || ||||| || ||||| ||| || ||||| || | ||| Sbjct 1976902 TACCCATCGTTTATCTGCTCATCGTCTAAGAAGCTCTGGTCCGACTGGTCAACGGAGCCA 1976961 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || || | || || || ||| ||| || | || ||||| || |||||| || || Sbjct 1976962 GAGACGACTTTCCCGGCGCAACTTGAGCAAGATCCGGCACGGCATGAGTAGGGCAAGTCG 1977021 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | || |||||||||| || || |||| ||| Sbjct 1977022 ATTCCGGCTTCCTCTGCAGCGTCGAGGACGTA 1977053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665478228486080