Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1028 149 7e-31 seq1071 122 1e-22 seq1728 120 4e-22 seq1188 113 5e-20 seq1470 107 2e-18 seq1651 98.7 1e-15 seq1639 91.5 2e-13 >seq1028 Length=1373109 Score = 149 bits (164), Expect = 7e-31 Identities = 282/414 (68%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| |||||||||||| | || ||||||||||||||| ||| Sbjct 778115 GTGGAGTTTCTGAAGAAACCCGAGAGATTTACTGCGGTTGGTGCCAAGATCCCGAAAGGT 778056 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || ||||| | || |||||| || ||| Sbjct 778055 GTTCTCCTTATTGGTCCTCCTGGTACCGGGAAAACCCTTTTAGCAAAAGCCATTGCTGGT 777996 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||| | | | ||||| ||||||||||| ||| Sbjct 777995 GAAGCTGGTGTGCCTTTCTTCTCCATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTCGGT 777936 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| ||| || |||||||| || | | ||| || || || || ||| Sbjct 777935 GTTGGTGCCTCAAGAGTCCGCGATCTTTTCAAGAAAGCCAAGGAGAACGCTCCTTGCATT 777876 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 ||||| ||||||| || ||||| || || | |||| | | |||| |||| | Sbjct 777875 GTCTTTGTTGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGT---GGA 777819 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | || || || |||||||| || | ||||| || || || ||||||||||| ||||| Sbjct 777818 GGTAACGATGAAAGAGAACAGACCCTCAATCAGCTCCTAACTGAGATGGATGGTTTTGAA 777759 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | | ||||| || | || |||| || || ||| | | ||||| |||||| Sbjct 777758 GGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGATATTCTTGAT 777705 >seq1071 Length=2817113 Score = 122 bits (134), Expect = 1e-22 Identities = 267/397 (67%), Gaps = 10/397 (3%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || ||||||| ||||||| ||| Sbjct 1432309 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCGGTTGGTGCCCGGATCCCCAAAGGT 1432368 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || | ||| || ||||| || || ||||| | || |||||| || ||| Sbjct 1432369 GTTCTCCTTGTTGGTCCTCCTGGTACTGGGAAAACCCTGTTGGCAAAAGCCATTGCTGGT 1432428 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||| | Sbjct 1432429 GAAGCTGGTGTACCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCG 1432486 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| ||||| |||||| |||||||| || ||| || |||||| || || | Sbjct 1432487 GTGTTGGTGCATCAAGGGTCCGCGATCTTTTCAAAAAAGCAAAAGAAAATGCTCCGTGCA 1432546 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 |||| || | ||||| || ||||| || || | |||| | | | || |||| Sbjct 1432547 TTGTTTTTGTGGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---G 1432603 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || ||||||| || || || ||||||||||| |||| Sbjct 1432604 GAGGTAATGATGAAAGAGAACAGACCCTTAATCAGCTCCTGACTGAGATGGATGGTTTTG 1432663 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628 | | | ||||| || | || |||| || || || Sbjct 1432664 AGGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAA 1432700 >seq1728 Length=1434513 Score = 120 bits (132), Expect = 4e-22 Identities = 275/411 (67%), Gaps = 11/411 (3%) Strand=Plus/Minus Query 177559 TCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCT 177618 |||| ||||| ||| | ||||| ||| | || || ||||| || ||||| | || Sbjct 580791 TCAAGAAACTCTTCCACTGTGTGTGCTTCCTCTGTTGCCACAACGTAATCATCTGGCTTC 580732 Query 177619 TCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTG 177678 ||||| || | ||| | |||||| ||||| |||||||| ||| ||||| ||||| Sbjct 580731 TCTTGCTGCAACATCAACCACATTGCTTCCACATAGTCTCCTGCAAATCCCCAATCTCTT 580672 Query 177679 GCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTC---ACCTTTCACAATTTGTTTG 177735 || || | || || || || | || || |||| ||| | || || Sbjct 580671 GCTGCCTGCAGATTCCCAAGG---AAGAGCTTCCTCTGCAAACCAACCTTGATCCGTCCC 580615 Query 177736 ACGCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTG 177795 | | | || |||||| | || || |||| ||||||| | |||||| ||||| ||| Sbjct 580614 AAGGCTCTTGTGATCTTCCTAGTCACGAAGTTCTCACCTCGGCGCGGTGACTCGTGATTG 580555 Query 177796 AAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAG 177855 || | ||||||| ||||| | | |||||||| |||||||||||| | ||| Sbjct 580554 AACAAGATTCCGTTACAGGCGAAGAGACCATAGGCTTCTCGGTAATTCACTGTGTACCAA 580495 Query 177856 TGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTT 177915 ||||| || ||||||| | | || |||| || | || || ||| ||| | | Sbjct 580494 TGAGCAGCGCATTTGGAAGCTGCGTAAGGAGATCTGGGATGAAACGGCGTCGTCTCTGAT 580435 Query 177916 TGTGGAGTTTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 ||||||| |||| || | |||||||||||||||| | ||||||||| Sbjct 580434 TGTGGAG----GCGGAGTTGACCCAAACATCTCCGAAGATCCGGCTTGGTA 580388 >seq1188 Length=2619186 Score = 113 bits (124), Expect = 5e-20 Identities = 196/281 (70%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| |||||||| ||||| ||| | || | || | || || ||| | || || || Sbjct 850922 GCCTGGTACGGGTAAGACACTCTTGGCTAGGGCGGTGGCTGGGGAAGCTGGAGTACCCTT 850981 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || ||| | ||| | | ||||||||| | || || ||||| ||||| || || Sbjct 850982 CTTCTCTTGCGCGGCCTCGGAGTTTGTGGAGCTTTTCGTCGGTGTCGGTGCATCTAGAGT 851041 Query 175434 TCGCGATCTCTTTGAAATCGCCCG--CGAAAATCAACCATGTATTGTCTTCATTGATGAG 175491 | | ||| | || || | || ||||| | || |||||||| |||||||||||| Sbjct 851042 TAGGGATTTGTTCGAGAAGGCTAAGTCGAAAGCC--CCTTGTATTGTATTCATTGATGAG 851099 Query 175492 ATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAG 175549 ||||| || ||||| | ||| | | ||||| ||| | | || |||||| ||||||| Sbjct 851100 ATTGACGCTGTGGGGAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAG 851157 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||| || |||||||| | | || ||||||||||| ||| Sbjct 851158 AACAGACCATTAATCAGTTGTTGACAGAGATGGATGGATTT 851198 >seq1470 Length=2917085 Score = 107 bits (118), Expect = 2e-18 Identities = 194/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || |||||||| ||||| || | || |||| | || || ||| | || || ||| Sbjct 2793559 CCGGGTACGGGGAAGACGCTTTTGGCTAGAGCTGTAGCTGGAGAAGCTGGAGTGCCGTTC 2793500 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | || |||| | | ||||| ||| | ||||||||||||||||| || ||| Sbjct 2793499 TTTTCATGTGCTGCGTCTGAGTTTGTTGAGCTTTTTGTTGGTGTGGGTGCGTCTAGAGTT 2793440 Query 175435 CGCGATCTCTTTGAAATCGCCCG--CGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||| | ||||| | || ||||| ||| |||||||| || || ||||||| Sbjct 2793439 AGGGATTTGTTTGAGAAGGCGAAATCGAAAGC--ACCTTGTATTGTGTTTATCGATGAGA 2793382 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCA-GCAAATGACGAGAGAGAA 175551 ||||||| ||||| | ||| | | ||||| | | || | |||||| ||||||||| Sbjct 2793381 TTGATGCCGTGGGTAGGCAGAGAGGAGCTGG-GATGGGCGGTGGAAATGATGAGAGAGAA 2793323 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || |||||||| || | || ||||||||||| ||| Sbjct 2793322 CAGACGATTAATCAGCTTTTGACTGAGATGGATGGATTT 2793284 >seq1651 Length=2713865 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 177744 AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGAT 177803 ||| || ||| ||||| |||| ||||||| | ||||| ||||||||||||||||| Sbjct 141168 AGTGATTTTCCGAGTGACGAAGTTCTCACCTCGGCGAGGTGACTCGTGGTTGAAGAGGAT 141109 Query 177804 TCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGC 177863 |||| |||||| |||| |||||||| |||||||| || | | ||||||||| || Sbjct 141108 TCCGTTGCAGGCGTACAGACCATAGGCCTCTCGGTAGTTGACGGTGTACCAGTGAGCCGC 141049 Query 177864 CAATTTGGA 177872 ||||||| Sbjct 141048 GCATTTGGA 141040 >seq1639 Length=5101707 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||| || | ||||| ||||||||| | ||| | |||| ||||||| || || Sbjct 2279957 GAAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGA---TCTCAAACCTTCGCTGAACG 2279901 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || | || || || ||||| || || ||||||||||| || || ||| | || | Sbjct 2279900 AATTGTAGCTTTCGCTTGTGTTGAAGGCATCTTCTTCTCTGGAAGCTTTTGCTCCATCTT 2279841 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | ||||| || ||||||||||| || || |||||||| ||| | || || || Sbjct 2279840 CTGGCTTAAGAAACGAGGTCTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCACG 2279781 Query 65202 AGATGAGGG 65210 ||| || || Sbjct 2279780 AGACGAAGG 2279772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596555103358720