Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq178 123 7e-24 >seq178 Length=2153606 Score = 123 bits (136), Expect = 7e-24 Identities = 139/185 (75%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 41580 AACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCG 41639 ||||||| | || || || ||| | || ||||| |||||| || || ||||||| | Sbjct 356571 AACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAACTCCTGTTG 356630 Query 41640 CCGCTGCGACT-GCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCT 41698 | ||||||||| ||||| ||| | | ||||| |||| ||||| ||||||||||| | Sbjct 356631 CAGCTGCGACTTGCTGTTTTCTTGATCTATCCAATTGGGCAGGGAAGTTTTTCTGATGGT 356690 Query 41699 ATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAAT 41758 ||||| | || || || || || ||||||| ||| | || |||||||||||||||| Sbjct 356691 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTACTCCAGGCTGAGCACAAC 356750 Query 41759 ATTCT 41763 ||||| Sbjct 356751 ATTCT 356755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146211024640576