Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq1639 118 3e-22 >seq1639 Length=5101707 Score = 118 bits (130), Expect = 3e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||||||| || ||||||||| | | ||| | | |||||||| |||| ||| || Sbjct 3906355 TGGGATCACTTCTGTAACTGGATACCGATCACTGAATATCGTCTTTACATTGGATGGCTT 3906414 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCT-CGCTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| |||| || |||| || | | | || || || || |||| |||| ||||| Sbjct 3906415 GGTGTTTTGATAAT-CCCTACCTTATACACCGCAACTTCCATTTCTATTATCGCATTCAT 3906473 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 || ||| |||| ||||| |||||||| |||||||||||| | ||||| |||||||| || Sbjct 3906474 TGTTGCTCCTCTAGTAGATATTGATGGTATTCGTGAACCTTTTTCTGGATCTCTTCTTTA 3906533 Query 42459 TGGCAACAACAT 42470 || ||||| || Sbjct 3906534 CGGAAACAATAT 3906545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143529486545312