Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq178 116 1e-21 >seq178 Length=2153606 Score = 116 bits (128), Expect = 1e-21 Identities = 129/171 (75%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 40986 AGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAA 41045 ||||||||||| || || |||| |||| ||| |||||||| || ||| |||||||| | Sbjct 356755 AGAATGTTGTGCTCAGCCTGGAGTACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGA 356696 Query 41046 GGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAG-AGC 41104 |||||||||||||| ||| ||||| || | |||||| | ||||| ||||| || || Sbjct 356695 GGCATACCATCAGAAAAACTTCCCTGCCCAATTGGATAGATCAAGAAAACAGCAAGTCGC 356636 Query 41105 TGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAG 41155 |||| | |||| || ||||| ||| ||||| || | |||||| || Sbjct 356635 AGCTGCAACAGGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCAG 356585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143699082630096