Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq178 123 3e-23 >seq178 Length=2153606 Score = 123 bits (136), Expect = 3e-23 Identities = 139/185 (75%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 67815 AGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGA 67874 || ||||||||||| || |||| || | ||| |||| ||||||||||| || || ||| Sbjct 356755 AGAATGTTGTGCTCAGCCTGGAGTACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGA 356696 Query 67875 GGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAAT-GC 67933 ||||| | ||||| ||| || || || | ||||||| |||||| ||||| | | || Sbjct 356695 GGCATACCATCAGAAAAACTTCCCTGCCCAATTGGATAGATCAAGAAAACAGCAAGTCGC 356636 Query 67934 TGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGA 67993 || | || |||| || ||||| ||| ||||||||||||||||| |||||| || Sbjct 356635 AGCTGCAACAGGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACT 356576 Query 67994 AAGTT 67998 ||||| Sbjct 356575 AAGTT 356571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566933423183040