Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq178 122 1e-22 seq1639 84.2 3e-11 >seq178 Length=2153606 Score = 122 bits (134), Expect = 1e-22 Identities = 132/174 (76%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 68296 AGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGA 68355 || ||||||||||| || |||| || | ||| |||||||||||||||| || || ||| Sbjct 356755 AGAATGTTGTGCTCAGCCTGGAGTACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGA 356696 Query 68356 GGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGC-GGATGC 68414 ||||| | ||||| || || || || | ||||||| || ||| || || | || Sbjct 356695 GGCATACCATCAGAAAAACTTCCCTGCCCAATTGGATAGATCAAGAAAACAGCAAGTCGC 356636 Query 68415 TGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACG 68468 ||||||||||| | || ||||||||| ||||||||||||||||| ||||| Sbjct 356635 AGCTGCAACAGGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACG 356582 >seq1639 Length=5101707 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 68644 ATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACA 68703 || ||||| || || ||||| || |||| || |||||||||||||||||| || || || Sbjct 3906545 ATATTGTTTCCGTAAAGAAGAGATCCAGAAAAAGGTTCACGAATACCATCAATATCTACT 3906486 Query 68704 GGGGGAGCAGCGATGAAGGCGACGAT-GAAACAGATGGTTGCTGCAAGCAGCGTAGGGAT 68762 | |||||| | ||||| |||| || |||| || ||||| | | |||||||| Sbjct 3906485 AGAGGAGCAACAATGAATGCGATAATAGAAATGGA-AGTTGCGGTGTATAAGGTAGGGAT 3906427 Query 68763 CATCAGGACGCCGAACCAACCAACGTAAAGGCG 68795 |||| || || | ||| |||| |||||| || Sbjct 3906426 TATCAAAACACCAAGCCATCCAATGTAAAGACG 3906394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572040499078080