Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq204 129 1e-24 seq1328 118 2e-21 seq793 109 1e-18 seq1177 100 5e-16 >seq204 Length=2333866 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||| | ||||| |||| ||| | || | ||||| || || || |||| Sbjct 1139363 ACCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGC 1139304 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | ||||| || || |||||||||||||| || ||||| | || ||||| || || Sbjct 1139303 GAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGG 1139244 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| || ||||| || |||| ||| | ||| || || ||||| || ||||| Sbjct 1139243 GATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAAC 1139184 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || || || ||||| ||||| || || || |||||||| Sbjct 1139183 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 1139133 >seq1328 Length=1576597 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||| | |||||||| | ||| |||| || | || | ||| || |||||| | || Sbjct 273110 ATATCTCCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTTATCA 273051 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | ||||| ||||||||||| | |||||| || || ||| Sbjct 273050 GCCAAAGTACGGCCATCTTCAAGCTGTTTACCGGCAAAAATAAGTCTCTGCTGGTCCGGA 272991 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| || || | || | ||| ||| || ||||| ||| Sbjct 272990 GGGATTCCTTCCTTATCTTGGATCTTTGCCTTAACATTGTCAATTGTGTCGGAGCTTTCA 272931 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || || |||||||| |||||||| Sbjct 272930 ACCTCAAGAGTTATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 272881 Score = 102 bits (112), Expect = 1e-16 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | ||||||||| ||||| || | ||||| | || ||||| Sbjct 273567 ATACCACCTCTTAGAAGAAGTACCAAATGCAGAGTTGATTCTTTCTGGACGTTGTAGTCA 273508 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAA-TCTCTGTTGATCAGG 193249 | | || | | ||| || | ||||| || || || || || ||||||||| || | Sbjct 273507 GCAAGAGTGCGACCATCCTCAAGATGTTTGCCAGCGAAGATAAAGTCTCTGTTGGTCTAG 273448 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 | ||||||||||| ||||| || || | || | ||| ||| || | || ||| Sbjct 273447 TTGGATTCCTTCTTTTTCTTGAATCTTCGCCTTGACATTGTCAATGGTGTGAGAGCTCTC 273388 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||||| || ||||| || || || |||| ||||| |||||||| Sbjct 273387 AACTTCTAGAGTAATGGTTTTTCCAGTGAGGGTTTCCACAAACATTTGCAT 273337 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || |||||||| || | |||||| || || ||||| ||||||||||| Sbjct 273264 ATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTT 273205 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || |||| || | || || ||||| || || || || || ||||| Sbjct 273204 ATCTTGGATCTTGGCCTTGACGTTATCGATGGTATCTGAGCTTTCGACCTCAAGTGTTAT 273145 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || ||||| || || || ||||| || ||||| Sbjct 273144 AGTCTTCCCTGTAAGAGTCTTAACAAAGATCTGCAT 273109 >seq793 Length=772624 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| || || || |||| || | || | ||||| ||| || || ||| Sbjct 610936 ATACCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCG 610877 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| |||| ||||| ||||| || |||||||| || || || ||| Sbjct 610876 GCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGA 610817 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || || | || | ||| || || || || |||| Sbjct 610816 GGAATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCA 610757 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || ||||| || || |||||||| Sbjct 610756 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq1177 Length=2734319 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| || || || |||| || | || | ||||| || || || ||| Sbjct 987956 ATACCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCG 987897 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| |||| ||||| ||||| || || ||||| || || || ||| Sbjct 987896 GCCAAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGA 987837 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | || | ||| || || ||||| ||| Sbjct 987836 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCG 987777 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || ||||| ||||| ||||| || || |||||||| Sbjct 987776 ACCTCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899632538398080