Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq793 95.1 2e-14 seq1328 93.3 6e-14 seq1208 84.2 3e-11 >seq793 Length=772624 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || ||||| || || || || ||| Sbjct 610935 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAGGTTGAGAGCTCT 610994 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| ||| || || || || || ||||| || ||||| || || Sbjct 610995 GATACTATTGACAACGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 611054 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||||||||||||||| ||||| |||||| | | || || | Sbjct 611055 CAAAGGCTCATCTTTGCCGGTAAGCAGCTTGAAGACGGAAGAACTCTTGCTGACTACA-- 611112 Query 156003 ATATCCAAA--GAGGCGACGCTTCA 156025 | ||||||| || |||| ||||| Sbjct 611113 ACATCCAAAAGGAATCGACCCTTCA 611137 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | ||||| || || || || | || || || ||| Sbjct 610707 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 610766 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || || |||||||||||||| ||||| || || Sbjct 610767 GACACCATCGACAATGTTAAGGCAAAGATCCAGGATAAAGAAGGCATTCCTCCGGACCAG 610826 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | |||||||| ||||| |||||| | | || || | ||||| || Sbjct 610827 CAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAC 610886 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| |||| || || || || | | |||||||| ||| Sbjct 610887 ATTCAGAAAGAATCGACCCTCCACTTGGTTCTCCGGTTAAGAGGTGGT 610934 >seq1328 Length=1576597 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | || || || ||||| ||| | || |||||| || Sbjct 273109 ATGCAGATCTTTGTTAAGACTCTTACAGGGAAGACTATAACACTTGAGGTCGAAAGCTCA 273168 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| || || || |||||||||||||| || |||||||| || Sbjct 273169 GATACCATCGATAACGTCAAGGCCAAGATCCAAGATAAAGAAGGAATCCCTCCAGACCAG 273228 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| | || | |||||||||||| ||||| ||| Sbjct 273229 CAGAGACTTATCTTTGCCGGTAAGCAACTCGAGGAT 273264 >seq1208 Length=4595443 Score = 84.2 bits (92), Expect = 3e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 155825 GCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGA 155884 ||| || ||| | || || ||||| || ||||| || || || || || ||| ||||| Sbjct 3925581 GCAGATCTTTGTGAAGACGTTGACAGGCAAAACCATCACTTTGGAGGTTGAAAGCTCTGA 3925640 Query 155885 TAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACA 155944 || |||| ||||| ||| ||| || ||||| || ||||| || ||||| || || || Sbjct 3925641 TACTATTGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCAGCA 3925700 Query 155945 -AAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| || || | || ||||||||||| || ||| Sbjct 3925701 GAAGCTT-ATCTTTGGTGGTAAGCAGCTAGAGGAT 3925734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731854215510400