Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq204 132 9e-26 seq406 113 9e-20 seq1328 107 4e-18 seq971 96.9 7e-15 seq1396 91.5 3e-13 seq1177 86.0 1e-11 seq793 86.0 1e-11 >seq204 Length=2333866 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||||||||| | || ||||| | ||| | ||||| ||| || ||||| | Sbjct 1139363 ACCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGC 1139304 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||||| | | || ||||||||||| || || |||||||| | || ||||| ||||| Sbjct 1139303 GAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGG 1139244 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || ||||| || || ||| ||||| || | || || ||||| || Sbjct 1139243 GATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAAC 1139184 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || || || || || |||| ||||| | || ||||||||||| Sbjct 1139183 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 1139133 >seq406 Length=3140938 Score = 113 bits (124), Expect = 9e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| | ||||| ||||| | || || ||||| | ||| | |||||| ||| || || Sbjct 2970406 ATAGTCCCACCCCTAAGCCTCAAGACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAG 2970465 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | || |||||| |||| || | ||||||||||||||| || | |||||||||||| Sbjct 2970466 TCCGCTAGTGTTCGACCATCTTCAAGTTGTTTACCAGCAAATATCAGCCTCTGTTGATCA 2970525 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATT 192450 ||||||||||| ||||| || ||| || Sbjct 2970526 GGTGGTATTCCCTCTTTGTCCTGTTTT 2970552 >seq1328 Length=1576597 Score = 107 bits (118), Expect = 4e-18 Identities = 163/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||| | | ||| ||||| | ||| | ||||| || || || ||| Sbjct 273567 ATACCACCTCTTAGAAGAAGTACCAAATGCAGAGTTGATTCTTTCTGGACGTTGTAGTCA 273508 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAA-TCTCTGTTGATCAGG 192425 | | || || |||| || | ||||| ||||| ||||| || ||||||||| || | Sbjct 273507 GCAAGAGTGCGACCATCCTCAAGATGTTTGCCAGCGAAGATAAAGTCTCTGTTGGTCTAG 273448 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 | | ||||||||||| ||||| || || || ||||| || | | || || Sbjct 273447 TTGGATTCCTTCTTTTTCTTGAATCTTCGCCTTGACATTGTCAATGGTGTGAGAGCTCTC 273388 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||||||||||||||| ||||| | |||| | ||| || ||||| Sbjct 273387 AACTTCTAGAGTAATGGTTTTTCCAGTGAGGGTTTCCACAAACATTTGCAT 273337 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | | | || | ||| | ||| || ||| || ||||| Sbjct 273338 ATGCCACCACGAAGACGAAGGAGAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCC 273279 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||| ||||| |||||||| | |||||| || || || Sbjct 273278 GCAAGCGTACGACCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGA 273219 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| || || || || ||| || | |||||| ||| Sbjct 273218 GGGATTCCTTCTTTATCTTGGATCTTGGCCTTGACGTTATCGATGGTATCTGAGCTTTCG 273159 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || || | || |||| ||| |||||||| Sbjct 273158 ACCTCAAGTGTTATAGTCTTCCCTGTAAGAGTCTTAACAAAGATCTGCAT 273109 >seq971 Length=4928269 Score = 96.9 bits (106), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| || | || || | ||| | ||||| |||||| ||| || ||||| | | Sbjct 3107453 CCACCTCTGAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCT 3107512 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || ||||| |||| || | ||| ||||||||||| || | || |||||||| |||||| Sbjct 3107513 AAGGTTCGGCCATCTTCGAGTTGCTTACCAGCAAATATCAGCCTTTGTTGATCGGGTGGT 3107572 Query 192430 ATTCCTTCTTTATCTTGT 192447 || || ||||| || ||| Sbjct 3107573 ATACCCTCTTTGTCCTGT 3107590 >seq1396 Length=1446835 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| || || || || | |||| ||| || || || || ||| Sbjct 400378 ATACCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCA 400319 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || |||| | || || | |||||| ||||||||||| |||||||| || || ||| Sbjct 400318 GCCAAAGTTCTGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCCGGT 400259 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || |||||| ||| ||||| || | || || || Sbjct 400258 GGAATACCCTCCTTGTCCTGAATTTTAGCTTTGACATTGTCGATGGTGTCGGAGCTCTCC 400199 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||| || ||||| || || || | || || ||||| Sbjct 400198 ACCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 400149 >seq1177 Length=2734319 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || || || | || | ||||| ||| || ||||| Sbjct 987956 ATACCACCTCTTAACCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCG 987897 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | |||||||| || ||||| ||||| || || || || Sbjct 987896 GCCAAGGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGA 987837 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || ||||| || | || || || Sbjct 987836 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCG 987777 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| |||||||||| |||||| | || || ||||| Sbjct 987776 ACCTCAAGAGTGATGGTCTTACCAGTTAGTGTTTTCACGAAAATTTGCAT 987727 >seq793 Length=772624 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || || || | || | ||||| || || ||||| Sbjct 610936 ATACCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCG 610877 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | |||||||| || ||||||||||| || || || || Sbjct 610876 GCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGA 610817 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || || ||||| || | || || || Sbjct 610816 GGAATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCA 610757 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || ||||| | |||||| | || || ||||| Sbjct 610756 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984455479064400