Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq204 120 5e-22 seq406 93.3 8e-14 seq793 91.5 3e-13 seq1328 89.7 9e-13 >seq204 Length=2333866 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||||||| || | || ||||| | ||| | ||||| || || ||||| | Sbjct 1139363 ACCTCCTCTAAGACGAAGCACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAATCGGC 1139304 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | |||| ||||||||||| || || || ||||| | || || || ||||| Sbjct 1139303 GAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGCTGATCCGGTGG 1139244 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| || ||||| || || ||| ||||| || || || || ||||| || Sbjct 1139243 GATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCGGATGATTCAAC 1139184 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || || || || || |||| ||||| | ||| ||||||||||| Sbjct 1139183 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 1139133 >seq406 Length=3140938 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | ||||| ||||| | || || ||||| | ||| | |||||| || || | Sbjct 2970404 TCATAGTCCCACCCCTAAGCCTCAAGACCAAATGAAGAGTCGACTCTTTCTGGATGTTGT 2970463 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 | || | || | ||| | || || | ||||||||||||||| || | |||||||| | Sbjct 2970464 AGTCCGCTAGTGTTCGACCATCTTCAAGTTGTTTACCAGCAAATATCAGCCTCTGTTGAT 2970523 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||||||||||| ||||| || ||| || Sbjct 2970524 CAGGTGGTATTCCCTCTTTGTCCTGTTTT 2970552 >seq793 Length=772624 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | || || || | || | ||||| ||| || ||||| Sbjct 610936 ATACCACCTCTTAACCGGAGAACCAAGTGGAGGGTCGATTCTTTCTGAATGTTGTAATCG 610877 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | |||||||| || || |||||||| || ||||| || Sbjct 610876 GCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGA 610817 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || || || || ||||| || || || || || Sbjct 610816 GGAATGCCTTCTTTATCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCA 610757 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || ||||| | |||||| | ||| || ||||| Sbjct 610756 ACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 610707 >seq1328 Length=1576597 Score = 89.7 bits (98), Expect = 9e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || | | ||| ||||| | ||| | ||||| | || || || Sbjct 273567 ATACCACCTCTTAGAAGAAGTACCAAATGCAGAGTTGATTCTTTCTGGACGTTGTAGTCA 273508 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA-TCTCTGTTGGTCAGG 171958 | | || || | || || | ||||| ||||| || || || |||||||||||| | Sbjct 273507 GCAAGAGTGCGACCATCCTCAAGATGTTTGCCAGCGAAGATAAAGTCTCTGTTGGTCTAG 273448 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 | | ||||||||||| ||||| || || || ||||| || || | || || Sbjct 273447 TTGGATTCCTTCTTTTTCTTGAATCTTCGCCTTGACATTGTCAATGGTGTGAGAGCTCTC 273388 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||||||||||||||| ||||| | |||| | || || ||||| Sbjct 273387 AACTTCTAGAGTAATGGTTTTTCCAGTGAGGGTTTCCACAAACATTTGCAT 273337 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| ||||| ||||| || | |||||| ||||| || || |||||||||||| Sbjct 273263 TCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTA 273204 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || || ||| || |||||||| ||| || || || || || Sbjct 273203 TCTTGGATCTTGGCCTTGACGTTATCGATGGTATCTGAGCTTTCGACCTCAAGTGTTATA 273144 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || | || |||| || |||||||| Sbjct 273143 GTCTTCCCTGTAAGAGTCTTAACAAAGATCTGCAT 273109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905114005195200